RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 LINC00574Q9H8X3 128 aa13.66□□□□□ -0.22
SFSWAP-203ENST00000535236 CASC2Q6XLA1 102 aa13.66□□□□□ -0.22
SFSWAP-203ENST00000535236 LINC00467Q9BRT7 94 aa13.66□□□□□ -0.22
SFSWAP-203ENST00000535236 HIST2H2BDQ6DRA6 164 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 TNCP24821 2201 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 A0A0J9YXY3 114 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 FRMD6-AS1P0C7T7 363 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 NDUFC2O95298 119 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 DENND4CQ5VZ89 1909 aa13.65□□□□□ -0.22
SFSWAP-203ENST00000535236 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.63□□□□□ -0.23
SFSWAP-203ENST00000535236 TNRC6AQ8NDV7 1962 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-203ENST00000535236 FAM19A5Q7Z5A7 132 aaPredicted RBP13.63□□□□□ -0.23
SFSWAP-203ENST00000535236 C20orf173Q96LM9 149 aa13.63□□□□□ -0.23
SFSWAP-203ENST00000535236 C7orf33Q8WU49 177 aa13.63□□□□□ -0.23
SFSWAP-203ENST00000535236 UPK3BQ9BT76 320 aa13.62□□□□□ -0.23
SFSWAP-203ENST00000535236 TNRC6BQ9UPQ9 1833 aaKnown RBP13.62□□□□□ -0.23
SFSWAP-203ENST00000535236 ZNF843Q8N446 348 aa13.62□□□□□ -0.23
SFSWAP-203ENST00000535236 NEXN-AS1Q8NBZ9 246 aa13.62□□□□□ -0.23
SFSWAP-203ENST00000535236 TAX1BP3O14907 124 aa13.62□□□□□ -0.23
SFSWAP-203ENST00000535236 P0C879 139 aa13.61□□□□□ -0.23
SFSWAP-203ENST00000535236 TRAV10A0A0B4J240 114 aa13.61□□□□□ -0.23
SFSWAP-203ENST00000535236 LY6G6DO95868 133 aa13.61□□□□□ -0.23
SFSWAP-203ENST00000535236 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-203ENST00000535236 KIF26AQ9ULI4 1882 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-203ENST00000535236 FSTL3O95633 263 aa13.6□□□□□ -0.23
SFSWAP-203ENST00000535236 IGLC6P0CF74 106 aa13.6□□□□□ -0.23
SFSWAP-203ENST00000535236 C11orf1Q9H5F2 150 aa13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 CDKN2A-AS1Q9UH64 79 aa13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 A0A1B0GXF2 115 aa13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 CFAP126Q5VTH2 177 aa13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 LINC00322Q6ZN03 302 aaPredicted RBP13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 TRBV6-8A0A0A6YYG3 113 aa13.59□□□□□ -0.23
SFSWAP-203ENST00000535236 SYCNQ0VAF6 134 aa13.58□□□□□ -0.24
SFSWAP-203ENST00000535236 TRBV6-4A0A1B0GX49 114 aa13.58□□□□□ -0.24
SFSWAP-203ENST00000535236 J3KT08 172 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 TCL1BO95988 128 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 C22orf34Q6ZV56 151 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 USP17L23D6RBM5 183 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 PTH2Q96A98 100 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 ADAMTS9Q9P2N4 1935 aa13.57□□□□□ -0.24
SFSWAP-203ENST00000535236 IBA57-AS1B1ANH7 110 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 EBI3Q14213 229 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 LINC00643Q86TS7 51 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 XAGE1AQ9HD64 81 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 TRAV23DV6A0A075B6W5 121 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 IGLV2-8P01709 118 aa13.56□□□□□ -0.24
SFSWAP-203ENST00000535236 C10orf99Q6UWK7 81 aa13.55□□□□□ -0.24
SFSWAP-203ENST00000535236 IGLV4-3A0A075B6K6 122 aa13.55□□□□□ -0.24
SFSWAP-203ENST00000535236 SPATA12Q7Z6I5 190 aa13.55□□□□□ -0.24
SFSWAP-203ENST00000535236 IGLV2-18A0A075B6J9 118 aa13.55□□□□□ -0.24
SFSWAP-203ENST00000535236 BRWD1-AS2P59051 145 aa13.55□□□□□ -0.24
SFSWAP-203ENST00000535236 TMEM131Q92545 1883 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 C1orf229Q6ZS94 237 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 ZFAND3Q9H8U3 227 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 UBE2D1P51668 147 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 BBC3Q96PG8 261 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 TMEM223A0PJW6 202 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 LY6LH3BQJ8 138 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 C11orf71Q6IPW1 123 aa13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 SPANXB1Q9NS25 103 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-203ENST00000535236 ZNF22P17026 224 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-203ENST00000535236 PSMG3-AS1Q96PY0 264 aa13.53□□□□□ -0.24
SFSWAP-203ENST00000535236 TECTAO75443 2155 aa13.53□□□□□ -0.24
SFSWAP-203ENST00000535236 BDP1A6H8Y1 2624 aa13.52□□□□□ -0.24
SFSWAP-203ENST00000535236 M0R2N4 97 aa13.52□□□□□ -0.25
SFSWAP-203ENST00000535236 GDF5OSQ5U4N7 250 aa13.52□□□□□ -0.25
SFSWAP-203ENST00000535236 ZNF702PQ9H963 129 aa13.52□□□□□ -0.25
SFSWAP-203ENST00000535236 M0QY20 66 aa13.52□□□□□ -0.25
SFSWAP-203ENST00000535236 Q8N976 141 aa13.52□□□□□ -0.25
SFSWAP-203ENST00000535236 NOTCH2Q04721 2471 aa13.51□□□□□ -0.25
SFSWAP-203ENST00000535236 SLPIP03973 132 aa13.51□□□□□ -0.25
SFSWAP-203ENST00000535236 PLXNB3Q9ULL4 1909 aa13.51□□□□□ -0.25
SFSWAP-203ENST00000535236 MLST8Q9BVC4 326 aa13.51□□□□□ -0.25
SFSWAP-203ENST00000535236 LINC00308Q8TCZ7 52 aa13.51□□□□□ -0.25
SFSWAP-203ENST00000535236 SCXQ7RTU7 201 aa13.5□□□□□ -0.25
SFSWAP-203ENST00000535236 PIK3CD-AS1Q5SR53 167 aa13.5□□□□□ -0.25
SFSWAP-203ENST00000535236 SVIPQ8NHG7 77 aa13.5□□□□□ -0.25
SFSWAP-203ENST00000535236 LINC01006Q8NI28 216 aa13.5□□□□□ -0.25
SFSWAP-203ENST00000535236 PROK1P58294 105 aa13.49□□□□□ -0.25
SFSWAP-203ENST00000535236 KPRPQ5T749 579 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-203ENST00000535236 DCANP1Q8TF63 244 aa13.49□□□□□ -0.25
SFSWAP-203ENST00000535236 ZNF706Q9Y5V0 76 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-203ENST00000535236 ACACBO00763 2458 aa13.49□□□□□ -0.25
SFSWAP-203ENST00000535236 ATRXP46100 2492 aa13.48□□□□□ -0.25
SFSWAP-203ENST00000535236 WFDC10BQ8IUB3 73 aa13.48□□□□□ -0.25
SFSWAP-203ENST00000535236 LY6G6CO95867 125 aa13.48□□□□□ -0.25
SFSWAP-203ENST00000535236 RBX1P62877 108 aa13.48□□□□□ -0.25
SFSWAP-203ENST00000535236 IGKV2-28A0A075B6P5 120 aa13.47□□□□□ -0.25
SFSWAP-203ENST00000535236 IGKV2D-28P01615 120 aa13.47□□□□□ -0.25
SFSWAP-203ENST00000535236 C9orf85Q96MD7 179 aa13.46□□□□□ -0.25
SFSWAP-203ENST00000535236 C6orf99Q4VX62 202 aa13.46□□□□□ -0.25
SFSWAP-203ENST00000535236 Q6ZPA2 131 aa13.46□□□□□ -0.25
SFSWAP-203ENST00000535236 C1orf158Q8N1D5 194 aa13.46□□□□□ -0.25
SFSWAP-203ENST00000535236 PPDPFQ9H3Y8 114 aa13.46□□□□□ -0.25
SFSWAP-203ENST00000535236 SDIM1Q6ZPB5 146 aa13.46□□□□□ -0.26
SFSWAP-203ENST00000535236 G3V4G9 280 aa13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 UBE2D4Q9Y2X8 147 aa13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 EIF4EBP1Q13541 118 aaPredicted RBP13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 OBSL1O75147 1896 aa13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 CD164L2Q6UWJ8 174 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms