RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 UBE2WQ96B02 151 aa13.22□□□□□ -0.29
CPSF1-209ENST00000532725 SMKR1H3BMG3 65 aa13.21□□□□□ -0.29
CPSF1-209ENST00000532725 EREGO14944 169 aa13.21□□□□□ -0.29
CPSF1-209ENST00000532725 POLR2KP53803 58 aaKnown RBP13.21□□□□□ -0.29
CPSF1-209ENST00000532725 HBBP68871 147 aa13.21□□□□□ -0.29
CPSF1-209ENST00000532725 MRPL51Q4U2R6 128 aaKnown RBP13.21□□□□□ -0.29
CPSF1-209ENST00000532725 SEC11CQ9BY50 192 aa13.21□□□□□ -0.29
CPSF1-209ENST00000532725 ST20Q9HBF5 79 aa13.21□□□□□ -0.29
CPSF1-209ENST00000532725 A0A1B0GUV1 79 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 I3L3M4 83 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 NCR2O95944 276 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 ANGP03950 147 aaKnown RBP13.2□□□□□ -0.3
CPSF1-209ENST00000532725 S100A8P05109 93 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 AMTP48728 403 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 Q0VG73 95 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 MAPKAPK5-AS1Q8N8E1 139 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 NRACQ8N912 160 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 TMEM70Q9BUB7 260 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 PGPEP1Q9NXJ5 209 aa13.2□□□□□ -0.3
CPSF1-209ENST00000532725 C16orf90A8MZG2 172 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 PMCHP20382 165 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 ATP5L2Q7Z4Y8 100 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 PRR34Q9NV39 138 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 COX11Q9Y6N1 276 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 KIAA1109Q2LD37 5005 aa13.19□□□□□ -0.3
CPSF1-209ENST00000532725 LRP1BQ9NZR2 4599 aa13.18□□□□□ -0.3
CPSF1-209ENST00000532725 DNAH5Q8TE73 4624 aa13.18□□□□□ -0.3
CPSF1-209ENST00000532725 PPP1R17O96001 155 aa13.18□□□□□ -0.3
CPSF1-209ENST00000532725 RMI2Q96E14 147 aa13.18□□□□□ -0.3
CPSF1-209ENST00000532725 IGKV2D-24A0A075B6R9 120 aa13.17□□□□□ -0.3
CPSF1-209ENST00000532725 TRBV27A0A0K0K1C4 114 aa13.17□□□□□ -0.3
CPSF1-209ENST00000532725 C10orf91Q5T1B1 145 aa13.17□□□□□ -0.3
CPSF1-209ENST00000532725 LINC00269Q8N2A0 174 aa13.17□□□□□ -0.3
CPSF1-209ENST00000532725 C20orf203Q8NBC4 194 aa13.17□□□□□ -0.3
CPSF1-209ENST00000532725 IGLV4-60A0A075B6I1 120 aa13.16□□□□□ -0.3
CPSF1-209ENST00000532725 TSHBP01222 138 aa13.16□□□□□ -0.3
CPSF1-209ENST00000532725 FUSP35637 526 aaKnown RBP eCLIP13.16□□□□□ -0.3
CPSF1-209ENST00000532725 TRBV24-1A0A075B6N3 115 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 VCYO14598 125 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 UBE2L6O14933 153 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 APCSP02743 223 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 CKS2P33552 79 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 IMMP2LQ96T52 175 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 CTDSP1Q9GZU7 261 aa13.15□□□□□ -0.3
CPSF1-209ENST00000532725 H7C423 109 aa13.14□□□□□ -0.31
CPSF1-209ENST00000532725 CRPP02741 224 aa13.14□□□□□ -0.31
CPSF1-209ENST00000532725 ESDP10768 282 aa13.14□□□□□ -0.31
CPSF1-209ENST00000532725 SUMO2P61956 95 aaKnown RBP13.14□□□□□ -0.31
CPSF1-209ENST00000532725 WFDC2Q14508 124 aa13.14□□□□□ -0.31
CPSF1-209ENST00000532725 MIAQ16674 131 aa13.14□□□□□ -0.31
CPSF1-209ENST00000532725 CDPF1Q6NVV7 123 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 Q8N814 137 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 BAALCQ8WXS3 180 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 BTF3L4Q96K17 158 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 C20orf78Q9BR46 151 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 C1orf43Q9BWL3 253 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 TMEM242Q9NWH2 141 aa13.13□□□□□ -0.31
CPSF1-209ENST00000532725 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-209ENST00000532725 IGKV2-29A2NJV5 120 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-209ENST00000532725 D6R8Y8 96 aa13.12□□□□□ -0.31
CPSF1-209ENST00000532725 TNFRSF6BO95407 300 aa13.12□□□□□ -0.31
CPSF1-209ENST00000532725 REG3AQ06141 175 aa13.12□□□□□ -0.31
CPSF1-209ENST00000532725 CARHSP1Q9Y2V2 147 aaKnown RBP13.12□□□□□ -0.31
CPSF1-209ENST00000532725 PPBPP02775 128 aa13.11□□□□□ -0.31
CPSF1-209ENST00000532725 KRTAP26-1Q6PEX3 210 aa13.11□□□□□ -0.31
CPSF1-209ENST00000532725 CLPSL2Q6UWE3 100 aa13.11□□□□□ -0.31
CPSF1-209ENST00000532725 HERC2O95714 4834 aa13.11□□□□□ -0.31
CPSF1-209ENST00000532725 LECT2O14960 151 aa13.1□□□□□ -0.31
CPSF1-209ENST00000532725 RPL32P62910 135 aaKnown RBP13.1□□□□□ -0.31
CPSF1-209ENST00000532725 PHOX2AO14813 284 aa13.09□□□□□ -0.31
CPSF1-209ENST00000532725 FGF6P10767 208 aa13.09□□□□□ -0.31
CPSF1-209ENST00000532725 AMMECR1LQ6DCA0 310 aa13.09□□□□□ -0.31
CPSF1-209ENST00000532725 TMEM136Q6ZRR5 245 aa13.09□□□□□ -0.31
CPSF1-209ENST00000532725 NTN5Q8WTR8 489 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-209ENST00000532725 C7orf77A4D0Y5 90 aa13.08□□□□□ -0.32
CPSF1-209ENST00000532725 NPYP01303 97 aa13.08□□□□□ -0.32
CPSF1-209ENST00000532725 KIR2DL4Q99706 377 aa13.08□□□□□ -0.32
CPSF1-209ENST00000532725 TRAV8-4A0A0B4J246 113 aa13.07□□□□□ -0.32
CPSF1-209ENST00000532725 FCER1GP30273 86 aa13.07□□□□□ -0.32
CPSF1-209ENST00000532725 RNASEKQ6P5S7 137 aaKnown RBP13.07□□□□□ -0.32
CPSF1-209ENST00000532725 ORMDL3Q8N138 153 aa13.07□□□□□ -0.32
CPSF1-209ENST00000532725 CLRN3Q8NCR9 226 aa13.07□□□□□ -0.32
CPSF1-209ENST00000532725 RYR1P21817 5038 aa13.06□□□□□ -0.32
CPSF1-209ENST00000532725 TRAV9-1A0A075B6T8 112 aa13.06□□□□□ -0.32
CPSF1-209ENST00000532725 ZNF25P17030 456 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-209ENST00000532725 PRELID3AQ96N28 172 aa13.06□□□□□ -0.32
CPSF1-209ENST00000532725 IGLV10-54A0A075B6I4 117 aa13.05□□□□□ -0.32
CPSF1-209ENST00000532725 IGLV5-52A0A0A0MRZ9 124 aa13.05□□□□□ -0.32
CPSF1-209ENST00000532725 CDK2AP2O75956 126 aa13.05□□□□□ -0.32
CPSF1-209ENST00000532725 MRPL52Q86TS9 123 aaKnown RBP13.05□□□□□ -0.32
CPSF1-209ENST00000532725 PRSS47A8MTI9 375 aa13.04□□□□□ -0.32
CPSF1-209ENST00000532725 GCSHP23434 173 aa13.04□□□□□ -0.32
CPSF1-209ENST00000532725 KRTAP10-1P60331 282 aa13.04□□□□□ -0.32
CPSF1-209ENST00000532725 RHEBQ15382 184 aa13.04□□□□□ -0.32
CPSF1-209ENST00000532725 SMIM2Q9BVW6 85 aa13.04□□□□□ -0.32
CPSF1-209ENST00000532725 APOBP04114 4563 aaKnown RBP13.04□□□□□ -0.32
CPSF1-209ENST00000532725 TMEM101Q96IK0 257 aa13.03□□□□□ -0.32
CPSF1-209ENST00000532725 RPS10P5Q9NQ39 176 aa13.03□□□□□ -0.32
CPSF1-209ENST00000532725 TCAPO15273 167 aa13.02□□□□□ -0.33
CPSF1-209ENST00000532725 HLA-DQA1P01909 254 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms