RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 FAM231AP0DMU4 169 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 FAM231CP0DMU5 169 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 CLUHP3Q96NS8 147 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 LRBAP50851 2863 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 E9PLD3 99 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 ITPR3Q14573 2671 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 HERVK_113P63121 156 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 UBE2V1Q13404 147 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 A0A0J9YXV3 536 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 RNASE13Q5GAN3 156 aaKnown RBP8.14□□□□□ -1.11
TRIM3-211ENST00000532542 FAM110AQ9BQ89 295 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 C11orf86A6NJI1 115 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 F5H768 121 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 CEND1Q8N111 149 aa8.14□□□□□ -1.11
TRIM3-211ENST00000532542 HELZ2Q9BYK8 2649 aaKnown RBP8.14□□□□□ -1.11
TRIM3-211ENST00000532542 IGLV2-18A0A075B6J9 118 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.13□□□□□ -1.11
TRIM3-211ENST00000532542 PAX4O43316 350 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 SMIM9A6NGZ8 99 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 COL12A1Q99715 3063 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 GAGE6Q13070 117 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 TTTY13Q9BZ97 58 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 WFDC10AQ9H1F0 79 aa8.13□□□□□ -1.11
TRIM3-211ENST00000532542 AGRNO00468 2067 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 PRM2P04554 102 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 LINC00467Q9BRT7 94 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 LEPROTO15243 131 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 SNCGO76070 127 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 NAA38Q9BRA0 125 aaKnown RBP8.12□□□□□ -1.11
TRIM3-211ENST00000532542 C9orf118A6NHY6 69 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 DEFB135Q30KP9 77 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 ZMAT4Q9H898 229 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 NDUFA12Q9UI09 145 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 KIF25-AS1Q9Y6Z4 181 aa8.12□□□□□ -1.11
TRIM3-211ENST00000532542 CRYBA4P53673 196 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.11□□□□□ -1.11
TRIM3-211ENST00000532542 RBMY1BA6NDE4 496 aaKnown RBP8.11□□□□□ -1.11
TRIM3-211ENST00000532542 RBMY1EA6NEQ0 496 aaKnown RBP8.11□□□□□ -1.11
TRIM3-211ENST00000532542 RBMY1DP0C7P1 496 aaKnown RBP8.11□□□□□ -1.11
TRIM3-211ENST00000532542 SS18Q15532 418 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 HHLA3Q9XRX5 114 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 TSHBP01222 138 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 FGF6P10767 208 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 ZZEF1O43149 2961 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 LINC01546A6NGU7 62 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 SPART-AS1P0CW21 52 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 CFAP161Q6P656 301 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 PRIMA1Q86XR5 153 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 PTH2Q96A98 100 aa8.11□□□□□ -1.11
TRIM3-211ENST00000532542 OPRPNQ99935 248 aaPredicted RBP8.11□□□□□ -1.11
TRIM3-211ENST00000532542 GYPEP15421 78 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 ATP6V0E2Q8NHE4 81 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 TEX48A0A1B0GUV7 120 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 MALP21145 153 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 C1orf158Q8N1D5 194 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 CBY1Q9Y3M2 126 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 PYGO1Q9Y3Y4 419 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 ITPR1Q14643 2758 aa8.1□□□□□ -1.11
TRIM3-211ENST00000532542 ATP5G1P05496 136 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 LINC00482Q8N8I6 264 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 ERG28Q9UKR5 140 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 FLNBO75369 2602 aaKnown RBP8.09□□□□□ -1.11
TRIM3-211ENST00000532542 IGLV4-3A0A075B6K6 122 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 SPINK8P0C7L1 97 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 PGPEP1Q9NXJ5 209 aa8.09□□□□□ -1.11
TRIM3-211ENST00000532542 PCP4P48539 62 aa8.09□□□□□ -1.12
TRIM3-211ENST00000532542 A0A0U1RRA0 63 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 TRBV6-4A0A1B0GX49 114 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 SLC25A29Q8N8R3 303 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 CHD6Q8TD26 2715 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 PRO0255Q9UI72 69 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 CRPP02741 224 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 BEAN1Q3B7T3 259 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 IGKV2D-26A0A0A0MRZ7 120 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 LINC00315P59091 139 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 TP73-AS1Q9UF72 201 aa8.08□□□□□ -1.12
TRIM3-211ENST00000532542 LAMA5O15230 3695 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 IGIPA6NJ69 53 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 LYRM9A8MSI8 78 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 RBMY1A1P0DJD3 496 aaKnown RBP8.07□□□□□ -1.12
TRIM3-211ENST00000532542 RBMY1CP0DJD4 496 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 RBMY1FQ15415 496 aaKnown RBP8.07□□□□□ -1.12
TRIM3-211ENST00000532542 CEMP1Q6PRD7 247 aaPredicted RBP8.07□□□□□ -1.12
TRIM3-211ENST00000532542 SFTA2Q6UW10 78 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 NPSP0C0P6 89 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 C6orf226Q5I0X4 101 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 KIR2DL5BQ8NHK3 375 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 A0A0J9YY99 117 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 Q6ZUT4 128 aa8.07□□□□□ -1.12
TRIM3-211ENST00000532542 RNASE8Q8TDE3 154 aaKnown RBP8.07□□□□□ -1.12
TRIM3-211ENST00000532542 C12orf74Q32Q52 190 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 DEFB121Q5J5C9 76 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 POM121L12Q8N7R1 296 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 A0A096LPF7 62 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 SH2D6Q7Z4S9 175 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 ASPMQ8IZT6 3477 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 LINC00158P58513 81 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 KRTAP1-1Q07627 177 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 SHISA2Q6UWI4 295 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 CR1P17927 2039 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms