RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 C9orf116Q5BN46 136 aaPredicted RBP1.96□□□□□ -2.1
CD44-229ENST00000528672 C20orf197Q8N268 126 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 SMCR5Q8TEV8 140 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 UBE2WQ96B02 151 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 TIMM21Q9BVV7 248 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 MYO5AQ9Y4I1 1855 aaKnown RBP1.96□□□□□ -2.1
CD44-229ENST00000528672 UBR4Q5T4S7 5183 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 ZFC3H1O60293 1989 aaKnown RBP1.96□□□□□ -2.1
CD44-229ENST00000528672 ZNF292O60281 2723 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 ANKRD36CQ5JPF3 1778 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 PHRF1Q9P1Y6 1649 aaKnown RBP1.95□□□□□ -2.1
CD44-229ENST00000528672 CD163L1Q9NR16 1453 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 DOPEY1Q5JWR5 2465 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 MYO9BQ13459 2157 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 TRPM6Q9BX84 2022 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 TRBV7-3A0A075B6L6 115 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 IGLV3-32A0A0A0MS00 114 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 TRAV22A0A0B4J277 110 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 hDV103S1A0JD37 113 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 TMEM30CPA0ZSE6 113 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 A8MWP4 228 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 C10orf142B7Z368 130 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 E7EUB6 86 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 LECT2O14960 151 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 HMGN2P05204 90 aaKnown RBP1.95□□□□□ -2.1
CD44-229ENST00000528672 MIFP14174 115 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 ZNF22P17026 224 aaPredicted RBP1.95□□□□□ -2.1
CD44-229ENST00000528672 ROMO1P60602 79 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 SSBP1Q04837 148 aaKnown RBP1.95□□□□□ -2.1
CD44-229ENST00000528672 C1orf134Q5TEV5 83 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 Q6JHZ5 121 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 ZCCHC23Q6ZST2 131 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 Q8N6K4 173 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 SPTSSBQ8NFR3 76 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 KLF14Q8TD94 323 aaPredicted RBP1.95□□□□□ -2.1
CD44-229ENST00000528672 FAM167A-AS1Q96KT0 104 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 LINC00167Q96N53 147 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 SMIM7Q9BQ49 75 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 CDC42SE1Q9NRR8 79 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 GNG13Q9P2W3 67 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 COL4A6Q14031 1691 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 SVILO95425 2214 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 SLIT2O94813 1529 aa1.95□□□□□ -2.1
CD44-229ENST00000528672 UBR1Q8IWV7 1749 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TSC2P49815 1807 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 BRWD3Q6RI45 1802 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TRBV25-1A0A075B6N4 114 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TEX49A0A1B0GTD5 131 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 A6NED7 52 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 CEBPZOSA8MTT3 80 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 F8WEM9 126 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 H3BVH4 76 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 LY6HO94772 140 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 LEPROTL1O95214 131 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 IGKV1D-33P01593 117 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 IGKV1-33P01594 117 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TRGV3P03979 118 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 UBE2D1P51668 147 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 MOBPQ13875 183 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 GDF5OSQ5U4N7 250 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 Q5VV11 94 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 ZNF826PQ6ZT77 177 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 DYNAPQ8N1N2 210 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 PSENENQ9NZ42 101 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 PRO1854Q9UHT4 67 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 UBE2D4Q9Y2X8 147 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 ICOSQ9Y6W8 199 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 USP32Q8NFA0 1604 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TJP1Q07157 1748 aa1.94□□□□□ -2.1
CD44-229ENST00000528672 TULP4Q9NRJ4 1543 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 PTPRBP23467 1997 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 IGHV3OR16-8A0A075B7F1 116 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 IGHV3-15A0A0B4J1V0 119 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 TRBV10-3A0A0K0K1G6 114 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 SH2D1AO60880 128 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 CLPSP04118 112 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 IFI27P40305 119 aaPredicted RBP1.93□□□□□ -2.1
CD44-229ENST00000528672 RPL28P46779 137 aaKnown RBP1.93□□□□□ -2.1
CD44-229ENST00000528672 SNRPGP62308 76 aaKnown RBP1.93□□□□□ -2.1
CD44-229ENST00000528672 PLGLAQ15195 96 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 SFTA2Q6UW10 78 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 LYZL1Q6UWQ5 148 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 Q6ZQT0 140 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 LYZL2Q7Z4W2 148 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 C1orf64Q8NEQ6 169 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 LINC00467Q9BRT7 94 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 LAMA2P24043 3122 aaKnown RBP1.93□□□□□ -2.1
CD44-229ENST00000528672 ARFGEF1Q9Y6D6 1849 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 EYSQ5T1H1 3165 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 UNC80Q8N2C7 3258 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 ABCA12Q86UK0 2595 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 PLXNB1O43157 2135 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 NUMA1Q14980 2115 aa1.93□□□□□ -2.1
CD44-229ENST00000528672 GCN1Q92616 2671 aaKnown RBP1.93□□□□□ -2.1
CD44-229ENST00000528672 THADAQ6YHU6 1953 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 PAPPAQ13219 1627 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 SLX4Q8IY92 1834 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 IGLV2-18A0A075B6J9 118 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 IGKV1OR2-108A0A075B7D4 117 aa1.92□□□□□ -2.1
CD44-229ENST00000528672 IGHV3-73A0A0B4J1V6 119 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms