RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-205ENST00000525257 NIT2Q9NQR4 276 aa15.09■□□□□ 0.01
USP47-205ENST00000525257 MAJINQ3KP22 176 aa15.08■□□□□ 0
USP47-205ENST00000525257 HIGD2BQ4VC39 106 aa15.08■□□□□ 0
USP47-205ENST00000525257 GTSF1Q8WW33 167 aa15.08■□□□□ 0
USP47-205ENST00000525257 IGKV2-24A0A0C4DH68 120 aa15.07■□□□□ 0
USP47-205ENST00000525257 COTL1Q14019 142 aa15.07■□□□□ 0
USP47-205ENST00000525257 ZNF345Q14585 488 aa15.07■□□□□ 0
USP47-205ENST00000525257 CFAP161Q6P656 301 aa15.07■□□□□ 0
USP47-205ENST00000525257 PRSS3P2Q8NHM4 247 aa15.07■□□□□ 0
USP47-205ENST00000525257 C11orf52Q96A22 123 aa15.07■□□□□ 0
USP47-205ENST00000525257 C19orf71A6NCJ1 209 aa15.06■□□□□ 0
USP47-205ENST00000525257 TRGC1P0CF51 173 aa15.06■□□□□ 0
USP47-205ENST00000525257 RPS10P46783 165 aaKnown RBP15.06■□□□□ 0
USP47-205ENST00000525257 ODF1Q14990 250 aa15.06■□□□□ 0
USP47-205ENST00000525257 GNG13Q9P2W3 67 aa15.06■□□□□ 0
USP47-205ENST00000525257 NDUFS6O75380 124 aaKnown RBP15.05■□□□□ -0
USP47-205ENST00000525257 PRR3P79522 188 aaKnown RBP15.05■□□□□ -0
USP47-205ENST00000525257 LYZL1Q6UWQ5 148 aa15.05■□□□□ -0
USP47-205ENST00000525257 LINC01600Q96MT4 127 aa15.05■□□□□ -0
USP47-205ENST00000525257 MANBALQ9NQG1 85 aa15.05■□□□□ -0
USP47-205ENST00000525257 F2Z2F3 143 aa15.04■□□□□ -0
USP47-205ENST00000525257 CCL20P78556 96 aa15.04■□□□□ -0
USP47-205ENST00000525257 XKRY2A2RUG3 117 aa15.03■□□□□ -0
USP47-205ENST00000525257 RAB19A4D1S5 217 aa15.03■□□□□ -0
USP47-205ENST00000525257 NTF3P20783 257 aa15.03■□□□□ -0
USP47-205ENST00000525257 STPG4Q8N801 248 aa15.03■□□□□ -0
USP47-205ENST00000525257 LYPD6BQ8NI32 183 aa15.03■□□□□ -0
USP47-205ENST00000525257 BCL2L11O43521 198 aa15.02■□□□□ -0
USP47-205ENST00000525257 IFNA1P01562 189 aa15.02■□□□□ -0
USP47-205ENST00000525257 BATF3Q9NR55 127 aa15.02■□□□□ -0
USP47-205ENST00000525257 KANTRA0A1W2PQU2 76 aa15.01□□□□□ -0.01
USP47-205ENST00000525257 GNG4P50150 75 aa15.01□□□□□ -0.01
USP47-205ENST00000525257 CHCHD10Q8WYQ3 142 aaPredicted RBP15.01□□□□□ -0.01
USP47-205ENST00000525257 A0A096LNI7 61 aa14.99□□□□□ -0.01
USP47-205ENST00000525257 AMMECR1LQ6DCA0 310 aa14.99□□□□□ -0.01
USP47-205ENST00000525257 GVQW2A0A096LPI5 108 aaPredicted RBP14.98□□□□□ -0.01
USP47-205ENST00000525257 TRAV26-2A0A0B4J265 109 aa14.98□□□□□ -0.01
USP47-205ENST00000525257 GATD1Q8NB37 220 aa14.98□□□□□ -0.01
USP47-205ENST00000525257 SMIM12Q96EX1 92 aa14.98□□□□□ -0.01
USP47-205ENST00000525257 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.97□□□□□ -0.01
USP47-205ENST00000525257 IGKV2-29A2NJV5 120 aaPredicted RBP14.97□□□□□ -0.01
USP47-205ENST00000525257 HMSDA8MTL9 139 aa14.97□□□□□ -0.01
USP47-205ENST00000525257 CTRLP40313 264 aa14.97□□□□□ -0.01
USP47-205ENST00000525257 TWIST1Q15672 202 aa14.97□□□□□ -0.01
USP47-205ENST00000525257 RNASEKQ6P5S7 137 aaKnown RBP14.97□□□□□ -0.01
USP47-205ENST00000525257 Q6ZNX1 250 aa14.97□□□□□ -0.01
USP47-205ENST00000525257 TRBV20OR9-2A0A075B6H5 130 aa14.96□□□□□ -0.01
USP47-205ENST00000525257 EIF5AP63241 154 aaKnown RBP14.96□□□□□ -0.01
USP47-205ENST00000525257 RGS21Q2M5E4 152 aa14.96□□□□□ -0.01
USP47-205ENST00000525257 C9orf62Q8N4C0 152 aa14.96□□□□□ -0.01
USP47-205ENST00000525257 A0A0J9YXV3 536 aa14.95□□□□□ -0.02
USP47-205ENST00000525257 RPL39LQ96EH5 51 aaKnown RBP14.95□□□□□ -0.02
USP47-205ENST00000525257 TRAV1-1A0A0B4J248 108 aa14.94□□□□□ -0.02
USP47-205ENST00000525257 MEF2BQ02080 365 aaPredicted RBP14.93□□□□□ -0.02
USP47-205ENST00000525257 FOXI1Q12951 378 aa14.93□□□□□ -0.02
USP47-205ENST00000525257 NUDT10Q8NFP7 164 aa14.93□□□□□ -0.02
USP47-205ENST00000525257 NUDT11Q96G61 164 aa14.93□□□□□ -0.02
USP47-205ENST00000525257 BIN3Q9NQY0 253 aa14.93□□□□□ -0.02
USP47-205ENST00000525257 MED9Q9NWA0 146 aa14.93□□□□□ -0.02
USP47-205ENST00000525257 PDE6DO43924 150 aa14.92□□□□□ -0.02
USP47-205ENST00000525257 NCR2O95944 276 aa14.92□□□□□ -0.02
USP47-205ENST00000525257 APCSP02743 223 aa14.92□□□□□ -0.02
USP47-205ENST00000525257 FGF6P10767 208 aa14.92□□□□□ -0.02
USP47-205ENST00000525257 CNFNQ9BYD5 112 aa14.92□□□□□ -0.02
USP47-205ENST00000525257 XCL1P47992 114 aa14.91□□□□□ -0.02
USP47-205ENST00000525257 KRTAP10-8P60410 259 aa14.91□□□□□ -0.02
USP47-205ENST00000525257 REG3GQ6UW15 175 aa14.91□□□□□ -0.02
USP47-205ENST00000525257 SPINK6Q6UWN8 80 aa14.91□□□□□ -0.02
USP47-205ENST00000525257 LINC00526Q96FQ7 95 aa14.91□□□□□ -0.02
USP47-205ENST00000525257 TEX46H3BTG2 121 aa14.9□□□□□ -0.02
USP47-205ENST00000525257 H7C423 109 aa14.9□□□□□ -0.02
USP47-205ENST00000525257 LINC00474Q9P2X8 69 aa14.9□□□□□ -0.02
USP47-205ENST00000525257 SDHAF1A6NFY7 115 aa14.88□□□□□ -0.03
USP47-205ENST00000525257 FOXA3P55318 350 aaPredicted RBP14.88□□□□□ -0.03
USP47-205ENST00000525257 OR5A1Q8NGJ0 315 aa14.88□□□□□ -0.03
USP47-205ENST00000525257 CARD19Q96LW7 228 aa14.88□□□□□ -0.03
USP47-205ENST00000525257 RNASE7Q9H1E1 156 aaKnown RBP14.88□□□□□ -0.03
USP47-205ENST00000525257 RPP21Q9H633 154 aaKnown RBP14.88□□□□□ -0.03
USP47-205ENST00000525257 CCL25O15444 150 aa14.87□□□□□ -0.03
USP47-205ENST00000525257 PKIGQ9Y2B9 76 aa14.87□□□□□ -0.03
USP47-205ENST00000525257 IGHV1-58A0A0C4DH39 117 aa14.86□□□□□ -0.03
USP47-205ENST00000525257 ZNF25P17030 456 aaPredicted RBP14.86□□□□□ -0.03
USP47-205ENST00000525257 SMIM15Q7Z3B0 74 aa14.86□□□□□ -0.03
USP47-205ENST00000525257 BTF3L4Q96K17 158 aa14.86□□□□□ -0.03
USP47-205ENST00000525257 LINC00959A0A1B0GUT2 108 aa14.85□□□□□ -0.03
USP47-205ENST00000525257 BCL2P10415 239 aa14.85□□□□□ -0.03
USP47-205ENST00000525257 Q6ZRP5 223 aa14.85□□□□□ -0.03
USP47-205ENST00000525257 TMEM101Q96IK0 257 aa14.85□□□□□ -0.03
USP47-205ENST00000525257 K7EN84 100 aa14.84□□□□□ -0.03
USP47-205ENST00000525257 SRSF9Q13242 221 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP47-205ENST00000525257 FAM231BA6NCW3 169 aa14.83□□□□□ -0.04
USP47-205ENST00000525257 PMCHP20382 165 aa14.83□□□□□ -0.04
USP47-205ENST00000525257 TEX261Q6UWH6 196 aa14.83□□□□□ -0.04
USP47-205ENST00000525257 I3L3M4 83 aa14.82□□□□□ -0.04
USP47-205ENST00000525257 EIF5AL1Q6IS14 154 aaKnown RBP14.82□□□□□ -0.04
USP47-205ENST00000525257 SYCNQ0VAF6 134 aa14.81□□□□□ -0.04
USP47-205ENST00000525257 OCC1Q8TAD7 63 aa14.81□□□□□ -0.04
USP47-205ENST00000525257 ZNF561-AS1K7EIQ3 104 aa14.8□□□□□ -0.04
USP47-205ENST00000525257 TMEM242Q9NWH2 141 aa14.8□□□□□ -0.04
USP47-205ENST00000525257 TSHBP01222 138 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms