RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KRTAP10-3P60369 221 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 CACNG7P62955 275 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 PAX8Q06710 450 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 ATXN8Q156A1 80 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 TMEM155Q4W5P6 130 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 C10orf128Q5T292 105 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 Q6ZR03 302 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 ARL17AQ8IVW1 177 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 LINC01561Q8N1V8 128 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 UPK3BQ9BT76 320 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 HHLA3Q9XRX5 114 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 KMT2AQ03164 3969 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 DOCK11Q5JSL3 2073 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 IGHV3OR16-10A0A075B7F0 116 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 NCBP2LA6PVI3 153 aaKnown RBP4.06□□□□□ -1.76
NUP54-218ENST00000515460 H3BVH4 76 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 UPK2O00526 184 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 SPINK4O60575 86 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 CA6P23280 308 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 KRTAP10-12P60413 245 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 HERVK_113P61574 105 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 RPL18AQ02543 176 aaKnown RBP4.06□□□□□ -1.76
NUP54-218ENST00000515460 GDF5OSQ5U4N7 250 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 RNF182Q8N6D2 247 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 MRPL53Q96EL3 112 aaKnown RBP4.06□□□□□ -1.76
NUP54-218ENST00000515460 IGF2BP2-AS1Q96M15 143 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 C16orf95Q9H693 158 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 RPUSD1Q9UJJ7 312 aaKnown RBP4.06□□□□□ -1.76
NUP54-218ENST00000515460 WDR83OSQ9Y284 106 aa4.06□□□□□ -1.76
NUP54-218ENST00000515460 LINC01549A6NIU2 74 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 H3BP45 60 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 APOHP02749 345 aaPredicted RBP4.05□□□□□ -1.76
NUP54-218ENST00000515460 IGF1P05019 195 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 ARL14EPLP0DKL9 152 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 FXYD4P59646 89 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 ERVK-16P61578 105 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 DEFB112Q30KQ8 113 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 FAM27BQ5VT28 67 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 OR8A1Q8NGG7 326 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 ITLN1Q8WWA0 313 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 OTORQ9NRC9 128 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 CALYQ9NYX4 217 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 ZNF492Q9P255 531 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 Q9UF83 564 aa4.05□□□□□ -1.76
NUP54-218ENST00000515460 AMMECR1Q9Y4X0 333 aaPredicted RBP4.05□□□□□ -1.76
NUP54-218ENST00000515460 LSM4Q9Y4Z0 139 aaKnown RBP4.05□□□□□ -1.76
NUP54-218ENST00000515460 PLAC8L1A1L4L8 177 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 KRTAP9-6A8MVA2 160 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 PEX7O00628 323 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 LTAP01374 205 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 IGLV2-8P01709 118 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 CCL1P22362 96 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 SYNJ2BPP57105 145 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 PCBD1P61457 104 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 ZNF816Q0VGE8 651 aaPredicted RBP4.04□□□□□ -1.76
NUP54-218ENST00000515460 FXYD3Q14802 87 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 FAM104BQ5XKR9 115 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 LYPD2Q6UXB3 125 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 SDIM1Q6ZPB5 146 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 NDUFA11Q86Y39 141 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 FMC1Q96HJ9 113 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 S1PR3Q99500 378 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 PAXXQ9BUH6 204 aa4.04□□□□□ -1.76
NUP54-218ENST00000515460 DAZ1Q9NQZ3 744 aaKnown RBP4.04□□□□□ -1.76
NUP54-218ENST00000515460 SRRM2Q9UQ35 2752 aaKnown RBP4.03□□□□□ -1.76
NUP54-218ENST00000515460 HEATR1Q9H583 2144 aaKnown RBP4.03□□□□□ -1.76
NUP54-218ENST00000515460 IGKV1D-8A0A087WSZ0 117 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 TMSB15BA0A087X1C1 80 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 A0A0B4J2C4 111 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 IGHV3-64DA0A0J9YX35 117 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 HIGD1CA8MV81 97 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 SRRM5B3KS81 715 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 PRSS46E5RG02 174 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 BCE1O60756 84 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 PRSS1P07477 247 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 IAPPP10997 89 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 PLNP26678 52 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 MYCNOSP40205 109 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 CRIP2P52943 208 aaPredicted RBP4.03□□□□□ -1.76
NUP54-218ENST00000515460 RIGQ13278 110 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 SPANXN5Q5MJ07 72 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 LCE1FQ5T754 118 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 BRD3OSQ6XYD6 125 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 ZFP2Q6ZN57 461 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 LINC00305Q7Z4B0 112 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 CYYR1Q96J86 154 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 METTL26Q96S19 204 aa4.03□□□□□ -1.76
NUP54-218ENST00000515460 RPP21Q9H633 154 aaKnown RBP4.03□□□□□ -1.76
NUP54-218ENST00000515460 WNK2Q9Y3S1 2297 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 TRAV40A0A0B4J280 105 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 CLPSL1A2RUU4 121 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 LINC01546A6NGU7 62 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 PMS2P5A8MQ11 134 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 H3BSH0 61 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 MRPS12O15235 138 aaKnown RBP4.02□□□□□ -1.77
NUP54-218ENST00000515460 FSTL3O95633 263 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 ZNF823P16415 610 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 FCER1GP30273 86 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 FGF12P61328 243 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 406.7 ms