RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 YAE1D1Q9NRH1 226 aa7.17□□□□□ -1.26
VCAN-210ENST00000513960 PIEZO1Q92508 2521 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 RNF223E7ERA6 249 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 EDN2P20800 178 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 ABCA2Q9BZC7 2435 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.16□□□□□ -1.26
VCAN-210ENST00000513960 IGKV2-29A2NJV5 120 aaPredicted RBP7.16□□□□□ -1.26
VCAN-210ENST00000513960 I3L3M4 83 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 GAGE2AQ6NT46 116 aa7.16□□□□□ -1.26
VCAN-210ENST00000513960 DAZ1Q9NQZ3 744 aaKnown RBP7.16□□□□□ -1.26
VCAN-210ENST00000513960 CIRBPQ14011 172 aaKnown RBP7.15□□□□□ -1.26
VCAN-210ENST00000513960 PRRC2AP48634 2157 aaKnown RBP7.15□□□□□ -1.26
VCAN-210ENST00000513960 EIF4EBP3O60516 100 aaPredicted RBP7.15□□□□□ -1.26
VCAN-210ENST00000513960 IGHV3-16A0A0C4DH30 117 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 BRI3O95415 125 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 SYNJ2BPP57105 145 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 ADAMTSL4-AS1Q5T5F5 129 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 C20orf203Q8NBC4 194 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 FAM110AQ9BQ89 295 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 C1orf43Q9BWL3 253 aa7.15□□□□□ -1.27
VCAN-210ENST00000513960 IGLV4-3A0A075B6K6 122 aa7.14□□□□□ -1.27
VCAN-210ENST00000513960 IGKV3OR2-268A0A0C4DH90 116 aa7.14□□□□□ -1.27
VCAN-210ENST00000513960 PPDPFQ9H3Y8 114 aa7.14□□□□□ -1.27
VCAN-210ENST00000513960 HOXD3P31249 432 aaPredicted RBP7.14□□□□□ -1.27
VCAN-210ENST00000513960 PROK1P58294 105 aa7.14□□□□□ -1.27
VCAN-210ENST00000513960 ITPR1Q14643 2758 aa7.14□□□□□ -1.27
VCAN-210ENST00000513960 IGHV3OR16-12A0A075B7B8 117 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 TRBV30A0A0K0K1B3 111 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 SOCS3O14543 225 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 KLK5Q9Y337 293 aaPredicted RBP7.13□□□□□ -1.27
VCAN-210ENST00000513960 H3BT86 120 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 DSCR9P59020 149 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 IGLV1-40P01703 118 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 SNRPD3P62318 126 aaKnown RBP7.13□□□□□ -1.27
VCAN-210ENST00000513960 MUC4Q99102 2169 aa7.13□□□□□ -1.27
VCAN-210ENST00000513960 AVPP01185 164 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 PRM2P04554 102 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 RHOHQ15669 191 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 AMELXQ99217 191 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 IGHV1OR15-1A0A075B7D0 117 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 TRAV13-1A0A0B4J241 112 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 TRBV27A0A0K0K1C4 114 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 M0QY20 66 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 NRGNQ92686 78 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 IGHV4OR15-8A0A075B7B6 117 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 A0A087WW49 117 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 LINC00315P59091 139 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 DOPEY1Q5JWR5 2465 aa7.12□□□□□ -1.27
VCAN-210ENST00000513960 M0QXV9 152 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 LINC00694P0DN24 101 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 MED14OSP0DP75 135 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 COL12A1Q99715 3063 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 MAP1AP78559 2803 aaPredicted RBP7.11□□□□□ -1.27
VCAN-210ENST00000513960 CACNA1AO00555 2505 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 ACACBO00763 2458 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 LOC107984640A0A0U1RRK4 108 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 IGHV4-59P01825 116 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 KHDC1LQ5JSQ8 128 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 OR13C6PQ8NH95 151 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 TOMM7Q9P0U1 55 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 K7EMT4 169 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 DEFB112Q30KQ8 113 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 LINC01356Q8N9X3 169 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 Q9H8V8 135 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 KIF25-AS1Q9Y6Z4 181 aa7.11□□□□□ -1.27
VCAN-210ENST00000513960 IGHV1-58A0A0C4DH39 117 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 MIAQ16674 131 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 Q6Q795 121 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 NXPH4O95158 308 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 Q9HAA7 133 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 DNAL4O96015 105 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 BAALC-AS2P0C853 105 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 PRIMA1Q86XR5 153 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 LST1O00453 97 aa7.1□□□□□ -1.27
VCAN-210ENST00000513960 IGKV3D-7A0A0C4DH55 119 aa7.09□□□□□ -1.27
VCAN-210ENST00000513960 MYO18BQ8IUG5 2567 aa7.09□□□□□ -1.27
VCAN-210ENST00000513960 POM121L12Q8N7R1 296 aa7.09□□□□□ -1.27
VCAN-210ENST00000513960 VPREB3Q9UKI3 123 aa7.09□□□□□ -1.27
VCAN-210ENST00000513960 FAM208BQ5VWN6 2430 aa7.09□□□□□ -1.27
VCAN-210ENST00000513960 CFHR3Q02985 330 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 DAZ2Q13117 558 aaKnown RBP7.09□□□□□ -1.28
VCAN-210ENST00000513960 NSUN5P1Q3KNT7 163 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 DAZ4Q86SG3 579 aaKnown RBP7.09□□□□□ -1.28
VCAN-210ENST00000513960 TMEM61Q8N0U2 210 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 FAM19A4Q96LR4 140 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 TMEM126AQ9H061 195 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 DAZ3Q9NR90 486 aaKnown RBP7.09□□□□□ -1.28
VCAN-210ENST00000513960 CDKN2A-AS1Q9UH64 79 aa7.09□□□□□ -1.28
VCAN-210ENST00000513960 USP9YO00507 2555 aaPredicted RBP7.08□□□□□ -1.28
VCAN-210ENST00000513960 PSMB8P28062 276 aa7.08□□□□□ -1.28
VCAN-210ENST00000513960 HERVK_113P63121 156 aa7.08□□□□□ -1.28
VCAN-210ENST00000513960 MAPK1IP1LQ8NDC0 245 aa7.08□□□□□ -1.28
VCAN-210ENST00000513960 USP9XQ93008 2570 aaPredicted RBP7.08□□□□□ -1.28
VCAN-210ENST00000513960 RNASE1P07998 156 aaKnown RBP7.08□□□□□ -1.28
VCAN-210ENST00000513960 IGHV3-53P01767 116 aa7.08□□□□□ -1.28
VCAN-210ENST00000513960 APRG1Q8IVJ8 170 aa7.08□□□□□ -1.28
VCAN-210ENST00000513960 C10orf99Q6UWK7 81 aa7.07□□□□□ -1.28
VCAN-210ENST00000513960 KLLNB2CW77 178 aa7.07□□□□□ -1.28
VCAN-210ENST00000513960 J3QLI3 93 aa7.07□□□□□ -1.28
VCAN-210ENST00000513960 DCANP1Q8TF63 244 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms