RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 GFRA4Q9GZZ7 299 aa8.05□□□□□ -1.12
PDPN-208ENST00000509009 TRAV8-4A0A0B4J246 113 aa8.04□□□□□ -1.12
PDPN-208ENST00000509009 TAGLN2P37802 199 aaKnown RBP8.04□□□□□ -1.12
PDPN-208ENST00000509009 CTRLP40313 264 aa8.04□□□□□ -1.12
PDPN-208ENST00000509009 TWIST1Q15672 202 aa8.04□□□□□ -1.12
PDPN-208ENST00000509009 CNFNQ9BYD5 112 aa8.04□□□□□ -1.12
PDPN-208ENST00000509009 LRP1Q07954 4544 aaKnown RBP8.04□□□□□ -1.12
PDPN-208ENST00000509009 K7EN84 100 aa8.03□□□□□ -1.12
PDPN-208ENST00000509009 GATD1Q8NB37 220 aa8.03□□□□□ -1.12
PDPN-208ENST00000509009 RNASE7Q9H1E1 156 aaKnown RBP8.03□□□□□ -1.12
PDPN-208ENST00000509009 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.03□□□□□ -1.12
PDPN-208ENST00000509009 PANO1I0J062 215 aa8.02□□□□□ -1.13
PDPN-208ENST00000509009 SLPIP03973 132 aa8.02□□□□□ -1.13
PDPN-208ENST00000509009 COTL1Q14019 142 aa8.02□□□□□ -1.13
PDPN-208ENST00000509009 RPP21Q9H633 154 aaKnown RBP8.02□□□□□ -1.13
PDPN-208ENST00000509009 TRAV26-2A0A0B4J265 109 aa8.01□□□□□ -1.13
PDPN-208ENST00000509009 OXTP01178 125 aa8.01□□□□□ -1.13
PDPN-208ENST00000509009 AMTP48728 403 aa8.01□□□□□ -1.13
PDPN-208ENST00000509009 FOXA3P55318 350 aaPredicted RBP8.01□□□□□ -1.13
PDPN-208ENST00000509009 RPL37AP61513 92 aaKnown RBP8.01□□□□□ -1.13
PDPN-208ENST00000509009 CNBPP62633 177 aaKnown RBP8.01□□□□□ -1.13
PDPN-208ENST00000509009 GTSF1Q8WW33 167 aa8.01□□□□□ -1.13
PDPN-208ENST00000509009 hDV102S1A0JD36 115 aa8□□□□□ -1.13
PDPN-208ENST00000509009 UBE2L6O14933 153 aa8□□□□□ -1.13
PDPN-208ENST00000509009 RPL39LQ96EH5 51 aaKnown RBP7.99□□□□□ -1.13
PDPN-208ENST00000509009 AP5S1Q9NUS5 200 aa7.99□□□□□ -1.13
PDPN-208ENST00000509009 TMEM250H0YL14 139 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 GATCO43716 136 aaKnown RBP7.98□□□□□ -1.13
PDPN-208ENST00000509009 HNRNPA3P51991 378 aaKnown RBP7.98□□□□□ -1.13
PDPN-208ENST00000509009 BLOC1S1P78537 153 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 CIRBPQ14011 172 aaKnown RBP7.98□□□□□ -1.13
PDPN-208ENST00000509009 SMIM15Q7Z3B0 74 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 LYPD6BQ8NI32 183 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 PKHD1L1Q86WI1 4243 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 FAT3Q8TDW7 4589 aa7.98□□□□□ -1.13
PDPN-208ENST00000509009 IGHV3-64A0A075B6Q5 118 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.97□□□□□ -1.13
PDPN-208ENST00000509009 GAGE12HA6NDE8 117 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 A8MWL6 223 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 NCR2O95944 276 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 TEX261Q6UWH6 196 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 ALKAL2Q6UX46 152 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 FAM231DQ6ZW35 169 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 DPH3Q96FX2 82 aa7.97□□□□□ -1.13
PDPN-208ENST00000509009 IGKV3OR2-268A0A0C4DH90 116 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 FAM231BA6NCW3 169 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 SDHAF1A6NFY7 115 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 SERTAD4-AS1Q5TG53 156 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 CFAP161Q6P656 301 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 C15orf56Q8N910 161 aa7.96□□□□□ -1.14
PDPN-208ENST00000509009 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.95□□□□□ -1.14
PDPN-208ENST00000509009 IGKV2-29A2NJV5 120 aaPredicted RBP7.95□□□□□ -1.14
PDPN-208ENST00000509009 H7C423 109 aa7.95□□□□□ -1.14
PDPN-208ENST00000509009 AMMECR1LQ6DCA0 310 aa7.95□□□□□ -1.14
PDPN-208ENST00000509009 CHCHD10Q8WYQ3 142 aaPredicted RBP7.95□□□□□ -1.14
PDPN-208ENST00000509009 RNF185Q96GF1 192 aa7.95□□□□□ -1.14
PDPN-208ENST00000509009 A0A087WYN8 130 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 TRBV6-5A0A0K0K1A5 114 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 GAS8-AS1O95177 125 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 APCSP02743 223 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 CHTF8P0CG12 524 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 FGF6P10767 208 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 PMCHP20382 165 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 CEBPGP53567 150 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 CT83Q5H943 113 aa7.94□□□□□ -1.14
PDPN-208ENST00000509009 RNASEKQ6P5S7 137 aaKnown RBP7.94□□□□□ -1.14
PDPN-208ENST00000509009 I3L3M4 83 aa7.93□□□□□ -1.14
PDPN-208ENST00000509009 RPS10P46783 165 aaKnown RBP7.93□□□□□ -1.14
PDPN-208ENST00000509009 NDUFS6O75380 124 aaKnown RBP7.92□□□□□ -1.14
PDPN-208ENST00000509009 ESDP10768 282 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 COX6A2Q02221 97 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 HIGD2BQ4VC39 106 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 SPACA4Q8TDM5 124 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 TSKUQ8WUA8 353 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 EIF5A2Q9GZV4 153 aaKnown RBP7.92□□□□□ -1.14
PDPN-208ENST00000509009 ST20Q9HBF5 79 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 PLAC8Q9NZF1 115 aa7.92□□□□□ -1.14
PDPN-208ENST00000509009 A0A1B0GUT8 65 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 HIGD1CA8MV81 97 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 TSHBP01222 138 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 ZNF25P17030 456 aaPredicted RBP7.91□□□□□ -1.14
PDPN-208ENST00000509009 RAB4AP20338 218 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 POLR2KP53803 58 aaKnown RBP7.91□□□□□ -1.14
PDPN-208ENST00000509009 FOXI1Q12951 378 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 LINC01551Q86U37 167 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 OR5A1Q8NGJ0 315 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 PRSS3P2Q8NHM4 247 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 SMIM7Q9BQ49 75 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 TMEM191AQ9H0A3 160 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 OSTCQ9NRP0 149 aa7.91□□□□□ -1.14
PDPN-208ENST00000509009 GVQW2A0A096LPI5 108 aaPredicted RBP7.9□□□□□ -1.14
PDPN-208ENST00000509009 LINC00959A0A1B0GUT2 108 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 SRP19P09132 144 aaKnown RBP7.9□□□□□ -1.14
PDPN-208ENST00000509009 IFITM2Q01629 132 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 Q6ZRU5 148 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 BORCS7Q96B45 105 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 TMEM101Q96IK0 257 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 FAM210AQ96ND0 272 aa7.9□□□□□ -1.14
PDPN-208ENST00000509009 TRBV27A0A0K0K1C4 114 aa7.89□□□□□ -1.15
PDPN-208ENST00000509009 ZNF727A8MUV8 499 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms