RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PRORYQ9H606 182 aa12.96□□□□□ -0.34
NUP54-205ENST00000507257 MEIG1Q5JSS6 88 aa12.95□□□□□ -0.34
NUP54-205ENST00000507257 COPS9Q8WXC6 57 aa12.95□□□□□ -0.34
NUP54-205ENST00000507257 TTC28Q96AY4 2481 aa12.95□□□□□ -0.34
NUP54-205ENST00000507257 NBL1P41271 181 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 CIRBPQ14011 172 aaKnown RBP12.94□□□□□ -0.34
NUP54-205ENST00000507257 DNAJC30Q96LL9 226 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 A8MTW9 85 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 IGKV3-20P01619 116 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 IGHV4-38-2P0DP08 117 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 LY6DQ14210 128 aa12.94□□□□□ -0.34
NUP54-205ENST00000507257 ABCA2Q9BZC7 2435 aa12.93□□□□□ -0.34
NUP54-205ENST00000507257 COX7A2LO14548 114 aa12.93□□□□□ -0.34
NUP54-205ENST00000507257 SDIM1Q6ZPB5 146 aa12.93□□□□□ -0.34
NUP54-205ENST00000507257 Q6ZSV7 163 aa12.93□□□□□ -0.34
NUP54-205ENST00000507257 CITED2Q99967 270 aaPredicted RBP12.93□□□□□ -0.34
NUP54-205ENST00000507257 SPTBN1Q01082 2364 aaKnown RBP12.93□□□□□ -0.34
NUP54-205ENST00000507257 CEMP1Q6PRD7 247 aaPredicted RBP12.92□□□□□ -0.34
NUP54-205ENST00000507257 IGLV5-39A0A0G2JS06 123 aa12.91□□□□□ -0.34
NUP54-205ENST00000507257 UCNP55089 124 aa12.91□□□□□ -0.34
NUP54-205ENST00000507257 SHISA2Q6UWI4 295 aa12.91□□□□□ -0.34
NUP54-205ENST00000507257 SMIM20Q8N5G0 67 aa12.91□□□□□ -0.34
NUP54-205ENST00000507257 RIF1Q5UIP0 2472 aaKnown RBP12.9□□□□□ -0.34
NUP54-205ENST00000507257 TRACP01848 142 aa12.9□□□□□ -0.34
NUP54-205ENST00000507257 ATP5G1P05496 136 aa12.9□□□□□ -0.34
NUP54-205ENST00000507257 FAM19A3Q7Z5A8 133 aa12.9□□□□□ -0.34
NUP54-205ENST00000507257 LINC00643Q86TS7 51 aa12.9□□□□□ -0.34
NUP54-205ENST00000507257 LINC00308Q8TCZ7 52 aa12.9□□□□□ -0.34
NUP54-205ENST00000507257 PTPRZ1P23471 2315 aaPredicted RBP12.9□□□□□ -0.34
NUP54-205ENST00000507257 A8MZ25 164 aa12.9□□□□□ -0.35
NUP54-205ENST00000507257 LINC01587Q99440 93 aa12.9□□□□□ -0.35
NUP54-205ENST00000507257 RBMY1A1P0DJD3 496 aaKnown RBP12.89□□□□□ -0.35
NUP54-205ENST00000507257 RBMY1CP0DJD4 496 aa12.89□□□□□ -0.35
NUP54-205ENST00000507257 NPC2P61916 151 aa12.89□□□□□ -0.35
NUP54-205ENST00000507257 RBMY1FQ15415 496 aaKnown RBP12.89□□□□□ -0.35
NUP54-205ENST00000507257 RNASE13Q5GAN3 156 aaKnown RBP12.89□□□□□ -0.35
NUP54-205ENST00000507257 PIMREGQ9BSJ6 248 aa12.89□□□□□ -0.35
NUP54-205ENST00000507257 CDKN2A-AS1Q9UH64 79 aa12.89□□□□□ -0.35
NUP54-205ENST00000507257 NACAE9PAV3 2078 aa12.89□□□□□ -0.35
NUP54-205ENST00000507257 IGHV4-61A0A0C4DH41 118 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 PROK1P58294 105 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 LINC00467Q9BRT7 94 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 CHCHD5Q9BSY4 110 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 DOPEY2Q9Y3R5 2298 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 IGHV3-53P01767 116 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 HERV-K104P63124 156 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 ZNF415Q09FC8 603 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 FAM222AQ5U5X8 452 aa12.88□□□□□ -0.35
NUP54-205ENST00000507257 HERVK_113P63121 156 aa12.87□□□□□ -0.35
NUP54-205ENST00000507257 BEAN1Q3B7T3 259 aa12.86□□□□□ -0.35
NUP54-205ENST00000507257 SPTA1P02549 2419 aa12.86□□□□□ -0.35
NUP54-205ENST00000507257 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.86□□□□□ -0.35
NUP54-205ENST00000507257 IGHV3-73A0A0B4J1V6 119 aa12.86□□□□□ -0.35
NUP54-205ENST00000507257 IGKV2-29A2NJV5 120 aaPredicted RBP12.86□□□□□ -0.35
NUP54-205ENST00000507257 CXCL5P42830 114 aa12.86□□□□□ -0.35
NUP54-205ENST00000507257 DAND5Q8N907 189 aa12.85□□□□□ -0.35
NUP54-205ENST00000507257 C10orf105Q8TEF2 133 aa12.85□□□□□ -0.35
NUP54-205ENST00000507257 COL6A6A6NMZ7 2263 aa12.85□□□□□ -0.35
NUP54-205ENST00000507257 FAM236AA0A1B0GUQ0 79 aa12.84□□□□□ -0.35
NUP54-205ENST00000507257 FAM236BA0A1B0GV22 79 aa12.84□□□□□ -0.35
NUP54-205ENST00000507257 Q6ZSN1 163 aa12.84□□□□□ -0.35
NUP54-205ENST00000507257 PEMTQ9UBM1 199 aa12.84□□□□□ -0.35
NUP54-205ENST00000507257 CFAP161Q6P656 301 aa12.84□□□□□ -0.35
NUP54-205ENST00000507257 Q9H8V8 135 aa12.83□□□□□ -0.36
NUP54-205ENST00000507257 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.82□□□□□ -0.36
NUP54-205ENST00000507257 SVEP1Q4LDE5 3571 aa12.82□□□□□ -0.36
NUP54-205ENST00000507257 TMEM95Q3KNT9 176 aa12.82□□□□□ -0.36
NUP54-205ENST00000507257 SMCR5Q8TEV8 140 aa12.82□□□□□ -0.36
NUP54-205ENST00000507257 Q9UF83 564 aa12.82□□□□□ -0.36
NUP54-205ENST00000507257 CSDC2Q9Y534 153 aaKnown RBP12.82□□□□□ -0.36
NUP54-205ENST00000507257 IGHV3OR16-12A0A075B7B8 117 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 UQCRQO14949 82 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 RS1O15537 224 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 PF4P02776 101 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 MSMBP08118 114 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 INAFM2P0DMQ5 153 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 SYNJ2BPP57105 145 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 DAZ2Q13117 558 aaKnown RBP12.81□□□□□ -0.36
NUP54-205ENST00000507257 DAZ4Q86SG3 579 aaKnown RBP12.81□□□□□ -0.36
NUP54-205ENST00000507257 C5orf38Q86SI9 138 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 C3orf22Q8N5N4 141 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 DUX5Q96PT3 197 aa12.81□□□□□ -0.36
NUP54-205ENST00000507257 DAZ3Q9NR90 486 aaKnown RBP12.81□□□□□ -0.36
NUP54-205ENST00000507257 LINC00242Q5T6M2 205 aa12.8□□□□□ -0.36
NUP54-205ENST00000507257 ZNF625Q96I27 306 aaPredicted RBP12.8□□□□□ -0.36
NUP54-205ENST00000507257 KNCNA6PVL3 124 aa12.8□□□□□ -0.36
NUP54-205ENST00000507257 COX6A2Q02221 97 aa12.8□□□□□ -0.36
NUP54-205ENST00000507257 DGAT2L7PQ6IED9 249 aa12.8□□□□□ -0.36
NUP54-205ENST00000507257 SOSTDC1Q6X4U4 206 aa12.8□□□□□ -0.36
NUP54-205ENST00000507257 ZFHX2Q9C0A1 2572 aaPredicted RBP12.79□□□□□ -0.36
NUP54-205ENST00000507257 SMIM1B2RUZ4 78 aa12.79□□□□□ -0.36
NUP54-205ENST00000507257 C11orf72Q8NBR9 251 aa12.79□□□□□ -0.36
NUP54-205ENST00000507257 BAALC-AS2P0C853 105 aa12.78□□□□□ -0.36
NUP54-205ENST00000507257 LINC00526Q96FQ7 95 aa12.78□□□□□ -0.36
NUP54-205ENST00000507257 C22orf24Q9Y442 160 aa12.78□□□□□ -0.36
NUP54-205ENST00000507257 ASH1LQ9NR48 2969 aaKnown RBP12.78□□□□□ -0.36
NUP54-205ENST00000507257 Q8N2B8 174 aa12.78□□□□□ -0.36
NUP54-205ENST00000507257 SPTAN1Q13813 2472 aaKnown RBP12.77□□□□□ -0.36
NUP54-205ENST00000507257 RBMY1BA6NDE4 496 aaKnown RBP12.77□□□□□ -0.37
NUP54-205ENST00000507257 RBMY1EA6NEQ0 496 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms