RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 A8MZ25 164 aa12.54□□□□□ -0.4
SQSTM1-211ENST00000506690 EDN2P20800 178 aa12.54□□□□□ -0.4
SQSTM1-211ENST00000506690 TRAV12-2A0A075B6T6 113 aa12.54□□□□□ -0.4
SQSTM1-211ENST00000506690 FAM236AA0A1B0GUQ0 79 aa12.54□□□□□ -0.4
SQSTM1-211ENST00000506690 FAM236BA0A1B0GV22 79 aa12.54□□□□□ -0.4
SQSTM1-211ENST00000506690 IGHV1OR15-1A0A075B7D0 117 aa12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 CEMP1Q6PRD7 247 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 C3orf56Q8N813 242 aa12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 EDA2RQ9HAV5 297 aa12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 TMEM95Q3KNT9 176 aa12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 VPREB3Q9UKI3 123 aa12.53□□□□□ -0.4
SQSTM1-211ENST00000506690 LMO4P61968 165 aa12.52□□□□□ -0.4
SQSTM1-211ENST00000506690 CITED2Q99967 270 aaPredicted RBP12.52□□□□□ -0.4
SQSTM1-211ENST00000506690 RNASE13Q5GAN3 156 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-211ENST00000506690 SPTBN1Q01082 2364 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-211ENST00000506690 K7EMT4 169 aa12.51□□□□□ -0.41
SQSTM1-211ENST00000506690 PF4V1P10720 104 aa12.51□□□□□ -0.41
SQSTM1-211ENST00000506690 SMCR5Q8TEV8 140 aa12.51□□□□□ -0.41
SQSTM1-211ENST00000506690 IGHG2P01859 326 aa12.5□□□□□ -0.41
SQSTM1-211ENST00000506690 IGKV3-20P01619 116 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 SDIM1Q6ZPB5 146 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 PPDPFQ9H3Y8 114 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 LINC00643Q86TS7 51 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 DAND5Q8N907 189 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 CACNA1AO00555 2505 aa12.49□□□□□ -0.41
SQSTM1-211ENST00000506690 C3orf22Q8N5N4 141 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 UBE2D4Q9Y2X8 147 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 IGHV3OR16-10A0A075B7F0 116 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 A0A1W2PPR1 153 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 SPINK13Q1W4C9 94 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 DUX5Q96PT3 197 aa12.48□□□□□ -0.41
SQSTM1-211ENST00000506690 COX7A2LO14548 114 aa12.47□□□□□ -0.41
SQSTM1-211ENST00000506690 NDUFA1O15239 70 aa12.47□□□□□ -0.41
SQSTM1-211ENST00000506690 IGLV1-40P01703 118 aa12.47□□□□□ -0.41
SQSTM1-211ENST00000506690 CHCHD7Q9BUK0 85 aa12.47□□□□□ -0.41
SQSTM1-211ENST00000506690 BPESC1Q9GZL8 116 aa12.47□□□□□ -0.41
SQSTM1-211ENST00000506690 UQCRQO14949 82 aa12.46□□□□□ -0.42
SQSTM1-211ENST00000506690 NDUFA7O95182 113 aa12.46□□□□□ -0.42
SQSTM1-211ENST00000506690 PROK1P58294 105 aa12.46□□□□□ -0.42
SQSTM1-211ENST00000506690 C9orf153Q5TBE3 101 aa12.46□□□□□ -0.42
SQSTM1-211ENST00000506690 LINC00308Q8TCZ7 52 aa12.45□□□□□ -0.42
SQSTM1-211ENST00000506690 UBTD1Q9HAC8 227 aa12.45□□□□□ -0.42
SQSTM1-211ENST00000506690 ATP5G1P05496 136 aa12.45□□□□□ -0.42
SQSTM1-211ENST00000506690 BRD3OSQ6XYD6 125 aa12.45□□□□□ -0.42
SQSTM1-211ENST00000506690 DNAJC30Q96LL9 226 aa12.45□□□□□ -0.42
SQSTM1-211ENST00000506690 IGLV5-45A0A087WSX0 123 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 IGHV3-73A0A0B4J1V6 119 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 LINC00694P0DN24 101 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 SNRPD3P62318 126 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 BEAN1Q3B7T3 259 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 RNF152Q8N8N0 203 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 LINC00526Q96FQ7 95 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 CDKN2A-AS1Q9UH64 79 aa12.44□□□□□ -0.42
SQSTM1-211ENST00000506690 CIRBPQ14011 172 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 LY6EQ16553 131 aa12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 BLCAPP62952 87 aa12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 DAZ2Q13117 558 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 DAZ4Q86SG3 579 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 NRGNQ92686 78 aa12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 DAZ3Q9NR90 486 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 DOPEY2Q9Y3R5 2298 aa12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 CELSR1Q9NYQ6 3014 aa12.43□□□□□ -0.42
SQSTM1-211ENST00000506690 K7EQG2 157 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 ITPR1Q14643 2758 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 C5orf38Q86SI9 138 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 Q9UF83 564 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 IGKV2-29A2NJV5 120 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 TRACP01848 142 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 CXCL5P42830 114 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 TIRAPP58753 221 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 PEMTQ9UBM1 199 aa12.42□□□□□ -0.42
SQSTM1-211ENST00000506690 CFHR3Q02985 330 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 C22orf24Q9Y442 160 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 GNLYP22749 145 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 Q8N2B8 174 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 LINC00467Q9BRT7 94 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 NACAE9PAV3 2078 aa12.41□□□□□ -0.42
SQSTM1-211ENST00000506690 A6NDX4 124 aa12.4□□□□□ -0.42
SQSTM1-211ENST00000506690 ABCA2Q9BZC7 2435 aa12.4□□□□□ -0.42
SQSTM1-211ENST00000506690 RBMY1A1P0DJD3 496 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-211ENST00000506690 RBMY1CP0DJD4 496 aa12.4□□□□□ -0.42
SQSTM1-211ENST00000506690 RBMY1FQ15415 496 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-211ENST00000506690 HIVEP3Q5T1R4 2406 aa12.4□□□□□ -0.43
SQSTM1-211ENST00000506690 IGLV5-39A0A0G2JS06 123 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 HERVK_113P63121 156 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 PKD1L2Q7Z442 2459 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 H3BUX3 64 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 BAALC-AS2P0C853 105 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 SOSTDC1Q6X4U4 206 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 Q6ZSN1 163 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 Q9H8V8 135 aa12.39□□□□□ -0.43
SQSTM1-211ENST00000506690 FAM222AQ5U5X8 452 aa12.38□□□□□ -0.43
SQSTM1-211ENST00000506690 SPTAN1Q13813 2472 aaKnown RBP12.37□□□□□ -0.43
SQSTM1-211ENST00000506690 COX7CP15954 63 aa12.37□□□□□ -0.43
SQSTM1-211ENST00000506690 COX6A2Q02221 97 aa12.37□□□□□ -0.43
SQSTM1-211ENST00000506690 COPS9Q8WXC6 57 aa12.37□□□□□ -0.43
SQSTM1-211ENST00000506690 KNCNA6PVL3 124 aa12.36□□□□□ -0.43
SQSTM1-211ENST00000506690 C2orf48Q96LS8 159 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms