RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 IGKV2-24A0A0C4DH68 120 aa9.93□□□□□ -0.82
PTPRF-215ENST00000496447 CACNA1AO00555 2505 aa9.93□□□□□ -0.82
PTPRF-215ENST00000496447 NACAE9PAV3 2078 aa9.93□□□□□ -0.82
PTPRF-215ENST00000496447 C11orf86A6NJI1 115 aa9.92□□□□□ -0.82
PTPRF-215ENST00000496447 FAM110AQ9BQ89 295 aa9.92□□□□□ -0.82
PTPRF-215ENST00000496447 HIGD2BQ4VC39 106 aa9.92□□□□□ -0.82
PTPRF-215ENST00000496447 NDUFA7O95182 113 aa9.92□□□□□ -0.82
PTPRF-215ENST00000496447 C20orf203Q8NBC4 194 aa9.92□□□□□ -0.82
PTPRF-215ENST00000496447 SONP18583 2426 aaKnown RBP9.92□□□□□ -0.82
PTPRF-215ENST00000496447 C19orf71A6NCJ1 209 aa9.91□□□□□ -0.82
PTPRF-215ENST00000496447 K7EQG2 157 aa9.91□□□□□ -0.82
PTPRF-215ENST00000496447 DIRC1Q969H9 104 aa9.91□□□□□ -0.82
PTPRF-215ENST00000496447 ODF3Q96PU9 254 aa9.91□□□□□ -0.82
PTPRF-215ENST00000496447 COL4A4P53420 1690 aaPredicted RBP9.91□□□□□ -0.82
PTPRF-215ENST00000496447 LINC00482Q8N8I6 264 aa9.9□□□□□ -0.82
PTPRF-215ENST00000496447 FREM1Q5H8C1 2179 aa9.9□□□□□ -0.82
PTPRF-215ENST00000496447 CRYGDP07320 174 aa9.9□□□□□ -0.82
PTPRF-215ENST00000496447 MIR7-3HGQ8N6C7 128 aa9.9□□□□□ -0.82
PTPRF-215ENST00000496447 B9D2Q9BPU9 175 aa9.9□□□□□ -0.82
PTPRF-215ENST00000496447 LINC00269Q8N2A0 174 aa9.9□□□□□ -0.83
PTPRF-215ENST00000496447 FAM236DA0A1B0GTK5 79 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 P0DMU3 169 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 FAM231AP0DMU4 169 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 FAM231CP0DMU5 169 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 FAM236CP0DP71 79 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 REG3AQ06141 175 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 IMUPQ9GZP8 106 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 P0C879 139 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 IGLC6P0CF74 106 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 CEMP1Q6PRD7 247 aaPredicted RBP9.89□□□□□ -0.83
PTPRF-215ENST00000496447 JMJD7-PLA2G4BH0Y9G9 81 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 ATRXP46100 2492 aa9.89□□□□□ -0.83
PTPRF-215ENST00000496447 OBSL1O75147 1896 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 IGHV1-58A0A0C4DH39 117 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 ZNF80P51504 273 aaPredicted RBP9.88□□□□□ -0.83
PTPRF-215ENST00000496447 MP68P56378 58 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 NREPQ16612 68 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 WFDC9Q8NEX5 89 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 TP73-AS1Q9UF72 201 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 MRPL55Q7Z7F7 128 aaKnown RBP9.88□□□□□ -0.83
PTPRF-215ENST00000496447 CLEC2BQ92478 149 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 IGLV2-8P01709 118 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 PLA2G2AP14555 144 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 EBI3Q14213 229 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 C10orf99Q6UWK7 81 aa9.88□□□□□ -0.83
PTPRF-215ENST00000496447 CHKB-CPT1BH3BT56 60 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 CCDC179H3BU77 68 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 GDF5OSQ5U4N7 250 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 MIFP14174 115 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 C1orf229Q6ZS94 237 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-215ENST00000496447 C2orf91Q6ZV80 131 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 LY6LH3BQJ8 138 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 ZFAND2AQ8N6M9 145 aa9.87□□□□□ -0.83
PTPRF-215ENST00000496447 LECT2O14960 151 aa9.86□□□□□ -0.83
PTPRF-215ENST00000496447 Q6Q795 121 aa9.86□□□□□ -0.83
PTPRF-215ENST00000496447 BRWD1-AS2P59051 145 aa9.86□□□□□ -0.83
PTPRF-215ENST00000496447 C20orf173Q96LM9 149 aa9.86□□□□□ -0.83
PTPRF-215ENST00000496447 TEX49A0A1B0GTD5 131 aa9.86□□□□□ -0.83
PTPRF-215ENST00000496447 M0QXV9 152 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 XGP55808 180 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 HIST2H2BDQ6DRA6 164 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 PSMG3-AS1Q96PY0 264 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 ZNF702PQ9H963 129 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 UFSP1Q6NVU6 142 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 MBD6Q96DN6 1003 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 CFAP126Q5VTH2 177 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 LINC01006Q8NI28 216 aa9.85□□□□□ -0.83
PTPRF-215ENST00000496447 NDUFC2-KCTD14E9PQ53 114 aa9.84□□□□□ -0.83
PTPRF-215ENST00000496447 CHCHD10Q8WYQ3 142 aaPredicted RBP9.84□□□□□ -0.83
PTPRF-215ENST00000496447 DSCAMO60469 2012 aa9.84□□□□□ -0.83
PTPRF-215ENST00000496447 FAM240AA0A1B0GVK7 77 aa9.84□□□□□ -0.83
PTPRF-215ENST00000496447 COX7BP24311 80 aa9.84□□□□□ -0.83
PTPRF-215ENST00000496447 LRCOL1A6NCL2 159 aa9.83□□□□□ -0.84
PTPRF-215ENST00000496447 HIGD2AQ9BW72 106 aa9.83□□□□□ -0.84
PTPRF-215ENST00000496447 Q6ZPA2 131 aa9.83□□□□□ -0.84
PTPRF-215ENST00000496447 WNK1Q9H4A3 2382 aa9.82□□□□□ -0.84
PTPRF-215ENST00000496447 TRAV10A0A0B4J240 114 aa9.82□□□□□ -0.84
PTPRF-215ENST00000496447 ATP5EP2Q5VTU8 51 aa9.82□□□□□ -0.84
PTPRF-215ENST00000496447 NFE4Q86UQ8 179 aa9.82□□□□□ -0.84
PTPRF-215ENST00000496447 ZNF106Q9H2Y7 1883 aaKnown RBP9.82□□□□□ -0.84
PTPRF-215ENST00000496447 ZFAND3Q9H8U3 227 aa9.82□□□□□ -0.84
PTPRF-215ENST00000496447 LINC00467Q9BRT7 94 aa9.81□□□□□ -0.84
PTPRF-215ENST00000496447 A0A087WZ39 114 aa9.81□□□□□ -0.84
PTPRF-215ENST00000496447 H7C423 109 aa9.81□□□□□ -0.84
PTPRF-215ENST00000496447 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-215ENST00000496447 ATP5EP56381 51 aaPredicted RBP9.81□□□□□ -0.84
PTPRF-215ENST00000496447 COX7CP15954 63 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 C20orf197Q8N268 126 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 MIAQ16674 131 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 ZNF295-AS1Q8N0V1 137 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 KIAA1549LQ6ZVL6 1849 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 H0Y9J4 135 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 LINC00322Q6ZN03 302 aaPredicted RBP9.8□□□□□ -0.84
PTPRF-215ENST00000496447 NEXN-AS1Q8NBZ9 246 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 SERP2Q8N6R1 65 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 PCDH15Q96QU1 1955 aa9.8□□□□□ -0.84
PTPRF-215ENST00000496447 HIVEP3Q5T1R4 2406 aa9.79□□□□□ -0.84
PTPRF-215ENST00000496447 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-215ENST00000496447 EIF4EBP1Q13541 118 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-215ENST00000496447 Q8N976 141 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms