RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TRAV12-2A0A075B6T6 113 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 A6NDX4 124 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 DAND5Q8N907 189 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 LINC00526Q96FQ7 95 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 DNAJC30Q96LL9 226 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 PEMTQ9UBM1 199 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 CACNA1HO95180 2353 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 ATP5J2P56134 94 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 C5orf38Q86SI9 138 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 LINC00308Q8TCZ7 52 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 DCHS2Q6V1P9 2916 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 BDP1A6H8Y1 2624 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 ACACAQ13085 2346 aa7.06□□□□□ -1.28
SYNE1-230ENST00000495090 IGLV5-39A0A0G2JS06 123 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 NDUFA7O95182 113 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 SPINK13Q1W4C9 94 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 BEAN1Q3B7T3 259 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 SMCR5Q8TEV8 140 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 ANKRD11Q6UB99 2663 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-230ENST00000495090 A0A1W2PPR1 153 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 NPC2P61916 151 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 C9orf153Q5TBE3 101 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 CEMP1Q6PRD7 247 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-230ENST00000495090 NRGNQ92686 78 aa7.05□□□□□ -1.28
SYNE1-230ENST00000495090 SPTBN2O15020 2390 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 A0A1B0GX51 115 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 A8MZ25 164 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 INAFM2P0DMQ5 153 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 EDN2P20800 178 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 FAM19A3Q7Z5A8 133 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 CACNA1BQ00975 2339 aa7.04□□□□□ -1.28
SYNE1-230ENST00000495090 HERVK_113P63121 156 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 DAZ2Q13117 558 aaKnown RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 RNASE13Q5GAN3 156 aaKnown RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 DAZ4Q86SG3 579 aaKnown RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 DAZ3Q9NR90 486 aaKnown RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 CDKN2A-AS1Q9UH64 79 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 EP300Q09472 2414 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 TMEM89A2RUT3 159 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 A8MTW9 85 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 IGKV3-20P01619 116 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 HIST1H4AP62805 103 aaKnown RBP7.03□□□□□ -1.28
SYNE1-230ENST00000495090 ZNF415Q09FC8 603 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 LRRC75A-AS1Q8N1F1 130 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 DUX5Q96PT3 197 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 DMXL1Q9Y485 3027 aa7.03□□□□□ -1.28
SYNE1-230ENST00000495090 H3BUX3 64 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 PF4P02776 101 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 COX7CP15954 63 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 PSMB8P28062 276 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 BRD3OSQ6XYD6 125 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 LINC00467Q9BRT7 94 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 UBTD1Q9HAC8 227 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 ATMQ13315 3056 aa7.02□□□□□ -1.29
SYNE1-230ENST00000495090 LRBAP50851 2863 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 IGHV3OR16-10A0A075B7F0 116 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 BAALC-AS2P0C853 105 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 CRYGAP11844 174 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 BLCAPP62952 87 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 LY6EQ16553 131 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 OVOL2Q9BRP0 275 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 Q9H8V8 135 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 LAMA5O15230 3695 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-230ENST00000495090 IGKV2-29A2NJV5 120 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-230ENST00000495090 ATOX1O00244 68 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 IGHV3-53P01767 116 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 RBMY1A1P0DJD3 496 aaKnown RBP7.01□□□□□ -1.29
SYNE1-230ENST00000495090 RBMY1CP0DJD4 496 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 LINC00694P0DN24 101 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 PROK1P58294 105 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 RBMY1FQ15415 496 aaKnown RBP7.01□□□□□ -1.29
SYNE1-230ENST00000495090 C22orf24Q9Y442 160 aa7.01□□□□□ -1.29
SYNE1-230ENST00000495090 TTC28Q96AY4 2481 aa7□□□□□ -1.29
SYNE1-230ENST00000495090 RPS28P62857 69 aaKnown RBP7□□□□□ -1.29
SYNE1-230ENST00000495090 SOSTDC1Q6X4U4 206 aa7□□□□□ -1.29
SYNE1-230ENST00000495090 HRNRQ86YZ3 2850 aaPredicted RBP7□□□□□ -1.29
SYNE1-230ENST00000495090 IGHV3-73A0A0B4J1V6 119 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 J3KT08 172 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-230ENST00000495090 ZNF625Q96I27 306 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-230ENST00000495090 C2orf48Q96LS8 159 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 CSDC2Q9Y534 153 aaKnown RBP6.99□□□□□ -1.29
SYNE1-230ENST00000495090 AKAP13Q12802 2813 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 IGHV3OR16-12A0A075B7B8 117 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 SMIM1B2RUZ4 78 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 IGHV4-38-2P0DP08 117 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 RPL28P46779 137 aaKnown RBP6.99□□□□□ -1.29
SYNE1-230ENST00000495090 KLRB1Q12918 225 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 LINC00242Q5T6M2 205 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 HIST2H2BCQ6DN03 193 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 HIST2H2BDQ6DRA6 164 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 Q6ZSN1 163 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 Q8N2B8 174 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 C3orf56Q8N813 242 aa6.99□□□□□ -1.29
SYNE1-230ENST00000495090 TRAV13-2A0A0B4J235 113 aa6.98□□□□□ -1.29
SYNE1-230ENST00000495090 COX6A2Q02221 97 aa6.98□□□□□ -1.29
SYNE1-230ENST00000495090 MALP21145 153 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 DGAT2L7PQ6IED9 249 aa6.97□□□□□ -1.29
SYNE1-230ENST00000495090 MED13LQ71F56 2210 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms