RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 FAM208BQ5VWN6 2430 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE12JA6NER3 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE7O76087 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE12FP0CL80 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE12GP0CL81 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE12IP0CL82 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 GAGE4Q13068 117 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 CLEC2BQ92478 149 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 IGKV3-20P01619 116 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 C2orf82Q6UX34 121 aa11.24□□□□□ -0.61
SDF4-207ENST00000494748 Q9UF83 564 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 H3BT86 120 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 RBMY1A1P0DJD3 496 aaKnown RBP11.23□□□□□ -0.61
SDF4-207ENST00000494748 RBMY1CP0DJD4 496 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 PROK1P58294 105 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 RBMY1FQ15415 496 aaKnown RBP11.23□□□□□ -0.61
SDF4-207ENST00000494748 VSIG2Q96IQ7 327 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 CELSR2Q9HCU4 2923 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 LST1O00453 97 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 SPINK13Q1W4C9 94 aa11.23□□□□□ -0.61
SDF4-207ENST00000494748 RNASE13Q5GAN3 156 aaKnown RBP11.23□□□□□ -0.61
SDF4-207ENST00000494748 HIVEP3Q5T1R4 2406 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 TMEM61Q8N0U2 210 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 RNF152Q8N8N0 203 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 H3BUX3 64 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 CD28P10747 220 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 NDUFA12Q9UI09 145 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 MUC6Q6W4X9 2439 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 TTC32Q5I0X7 151 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 ACACBO00763 2458 aa11.22□□□□□ -0.61
SDF4-207ENST00000494748 K7EQG2 157 aa11.21□□□□□ -0.62
SDF4-207ENST00000494748 FAM240AA0A1B0GVK7 77 aa11.21□□□□□ -0.62
SDF4-207ENST00000494748 MRPL23Q16540 153 aaKnown RBP11.21□□□□□ -0.62
SDF4-207ENST00000494748 CHCHD7Q9BUK0 85 aa11.21□□□□□ -0.62
SDF4-207ENST00000494748 TINCRA0A1B0GVN0 87 aa11.2□□□□□ -0.62
SDF4-207ENST00000494748 PRSS2P07478 247 aa11.2□□□□□ -0.62
SDF4-207ENST00000494748 NPC2P61916 151 aa11.2□□□□□ -0.62
SDF4-207ENST00000494748 FOXC1Q12948 553 aa11.2□□□□□ -0.62
SDF4-207ENST00000494748 DUX3Q96PT4 197 aa11.19□□□□□ -0.62
SDF4-207ENST00000494748 TMEM95Q3KNT9 176 aa11.19□□□□□ -0.62
SDF4-207ENST00000494748 UBE2D4Q9Y2X8 147 aa11.19□□□□□ -0.62
SDF4-207ENST00000494748 Q6ZSN1 163 aa11.19□□□□□ -0.62
SDF4-207ENST00000494748 CITED2Q99967 270 aaPredicted RBP11.19□□□□□ -0.62
SDF4-207ENST00000494748 USP9XQ93008 2570 aaPredicted RBP11.18□□□□□ -0.62
SDF4-207ENST00000494748 PSMB8P28062 276 aa11.18□□□□□ -0.62
SDF4-207ENST00000494748 IGHV3-73A0A0B4J1V6 119 aa11.18□□□□□ -0.62
SDF4-207ENST00000494748 C10orf99Q6UWK7 81 aa11.18□□□□□ -0.62
SDF4-207ENST00000494748 IGHV4-61A0A0C4DH41 118 aa11.17□□□□□ -0.62
SDF4-207ENST00000494748 TRBV7-7A0A0K0K1E9 115 aa11.17□□□□□ -0.62
SDF4-207ENST00000494748 TIMM17BO60830 172 aa11.17□□□□□ -0.62
SDF4-207ENST00000494748 KLRB1Q12918 225 aa11.17□□□□□ -0.62
SDF4-207ENST00000494748 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.17□□□□□ -0.62
SDF4-207ENST00000494748 HTN1P15515 57 aa11.17□□□□□ -0.62
SDF4-207ENST00000494748 DAND5Q8N907 189 aa11.16□□□□□ -0.62
SDF4-207ENST00000494748 FAM110AQ9BQ89 295 aa11.15□□□□□ -0.62
SDF4-207ENST00000494748 CENPEQ02224 2701 aa11.15□□□□□ -0.62
SDF4-207ENST00000494748 TRGV11A0A075B6L2 103 aa11.15□□□□□ -0.62
SDF4-207ENST00000494748 PRM2P04554 102 aa11.15□□□□□ -0.62
SDF4-207ENST00000494748 SNRPD3P62318 126 aaKnown RBP11.15□□□□□ -0.62
SDF4-207ENST00000494748 SPTBN4Q9H254 2564 aa11.15□□□□□ -0.63
SDF4-207ENST00000494748 IGLV5-45A0A087WSX0 123 aa11.14□□□□□ -0.63
SDF4-207ENST00000494748 C19orf84I3L1E1 186 aa11.14□□□□□ -0.63
SDF4-207ENST00000494748 COX6CP09669 75 aa11.14□□□□□ -0.63
SDF4-207ENST00000494748 LINC00467Q9BRT7 94 aa11.14□□□□□ -0.63
SDF4-207ENST00000494748 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.13□□□□□ -0.63
SDF4-207ENST00000494748 IGKV2-29A2NJV5 120 aaPredicted RBP11.13□□□□□ -0.63
SDF4-207ENST00000494748 SHISA2Q6UWI4 295 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 CHCHD5Q9BSY4 110 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 SPANXA1Q9NS26 97 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 CSMD2Q7Z408 3487 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 NDUFA1O15239 70 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 CDKN2A-AS1Q9UH64 79 aa11.13□□□□□ -0.63
SDF4-207ENST00000494748 SMCR5Q8TEV8 140 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 TMEM101Q96IK0 257 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 YAE1D1Q9NRH1 226 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 C22orf24Q9Y442 160 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 CCDC168Q8NDH2 2452 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 KNCNA6PVL3 124 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 LINC01587Q99440 93 aa11.12□□□□□ -0.63
SDF4-207ENST00000494748 BEAN1Q3B7T3 259 aa11.11□□□□□ -0.63
SDF4-207ENST00000494748 RBMY1BA6NDE4 496 aaKnown RBP11.11□□□□□ -0.63
SDF4-207ENST00000494748 RBMY1EA6NEQ0 496 aaKnown RBP11.11□□□□□ -0.63
SDF4-207ENST00000494748 AVPP01185 164 aa11.11□□□□□ -0.63
SDF4-207ENST00000494748 RBMY1DP0C7P1 496 aaKnown RBP11.11□□□□□ -0.63
SDF4-207ENST00000494748 COX6A2Q02221 97 aa11.11□□□□□ -0.63
SDF4-207ENST00000494748 A8MTW9 85 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 TNFRSF18Q9Y5U5 241 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 MEIG1Q5JSS6 88 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 SOSTDC1Q6X4U4 206 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 SDIM1Q6ZPB5 146 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 SMIM20Q8N5G0 67 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 POLQO75417 2590 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 LINC00308Q8TCZ7 52 aa11.1□□□□□ -0.63
SDF4-207ENST00000494748 Q8N2B8 174 aa11.09□□□□□ -0.63
SDF4-207ENST00000494748 IGLV5-39A0A0G2JS06 123 aa11.09□□□□□ -0.63
SDF4-207ENST00000494748 TIRAPP58753 221 aa11.09□□□□□ -0.63
SDF4-207ENST00000494748 SYNJ2BPP57105 145 aa11.08□□□□□ -0.64
SDF4-207ENST00000494748 C10orf105Q8TEF2 133 aa11.08□□□□□ -0.64
SDF4-207ENST00000494748 HERV-K104P63124 156 aa11.08□□□□□ -0.64
SDF4-207ENST00000494748 IGHV3-38A0A0C4DH36 116 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms