RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PFN2P35080 140 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 TINCRA0A1B0GVN0 87 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 C10orf99Q6UWK7 81 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 HIST2H2BCQ6DN03 193 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 TMEM61Q8N0U2 210 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 SLC25A29Q8N8R3 303 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 LAMTOR3Q9UHA4 124 aa12.31□□□□□ -0.44
CCDC88B-209ENST00000494080 TRBV7-3A0A075B6L6 115 aa12.31□□□□□ -0.44
CCDC88B-209ENST00000494080 NOP10Q9NPE3 64 aaKnown RBP12.31□□□□□ -0.44
CCDC88B-209ENST00000494080 IGF1P05019 195 aa12.31□□□□□ -0.44
CCDC88B-209ENST00000494080 WDFY4Q6ZS81 3184 aa12.3□□□□□ -0.44
CCDC88B-209ENST00000494080 DNAJC30Q96LL9 226 aa12.3□□□□□ -0.44
CCDC88B-209ENST00000494080 ZFAND3Q9H8U3 227 aa12.3□□□□□ -0.44
CCDC88B-209ENST00000494080 A0A096LPF7 62 aa12.29□□□□□ -0.44
CCDC88B-209ENST00000494080 TRAV4A0A0B4J268 109 aa12.29□□□□□ -0.44
CCDC88B-209ENST00000494080 J3KT08 172 aa12.29□□□□□ -0.44
CCDC88B-209ENST00000494080 LGALS9O00182 355 aa12.29□□□□□ -0.44
CCDC88B-209ENST00000494080 WFDC11Q8NEX6 87 aa12.29□□□□□ -0.44
CCDC88B-209ENST00000494080 TNRC6BQ9UPQ9 1833 aaKnown RBP12.28□□□□□ -0.44
CCDC88B-209ENST00000494080 MDFICQ9P1T7 246 aa12.28□□□□□ -0.44
CCDC88B-209ENST00000494080 SMAD5-AS1Q9Y6J3 95 aa12.28□□□□□ -0.44
CCDC88B-209ENST00000494080 F5H768 121 aa12.28□□□□□ -0.44
CCDC88B-209ENST00000494080 Q8N6K4 173 aa12.28□□□□□ -0.44
CCDC88B-209ENST00000494080 IGKV3D-7A0A0C4DH55 119 aa12.27□□□□□ -0.44
CCDC88B-209ENST00000494080 IGHV3-30-3P0DP02 117 aa12.27□□□□□ -0.44
CCDC88B-209ENST00000494080 HIST2H2BDQ6DRA6 164 aa12.27□□□□□ -0.45
CCDC88B-209ENST00000494080 Q6ZS46 218 aa12.27□□□□□ -0.45
CCDC88B-209ENST00000494080 IGHV3-33P01772 117 aa12.27□□□□□ -0.45
CCDC88B-209ENST00000494080 NRACQ8N912 160 aa12.27□□□□□ -0.45
CCDC88B-209ENST00000494080 ADAMTS20P59510 1910 aa12.26□□□□□ -0.45
CCDC88B-209ENST00000494080 A0A1B0GX51 115 aa12.26□□□□□ -0.45
CCDC88B-209ENST00000494080 A0A0J9YX75 114 aa12.26□□□□□ -0.45
CCDC88B-209ENST00000494080 HERVK_113P63121 156 aa12.26□□□□□ -0.45
CCDC88B-209ENST00000494080 TET2Q6N021 2002 aaPredicted RBP12.26□□□□□ -0.45
CCDC88B-209ENST00000494080 A0A0B4J2C4 111 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 DAD1P61803 113 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 SHISA2Q6UWI4 295 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 CITED2Q99967 270 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 TMEM243Q9BU79 118 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 TRAV13-2A0A0B4J235 113 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 IGHV4-31P0DP07 118 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 C20orf173Q96LM9 149 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 C11orf21Q9P2W6 132 aa12.25□□□□□ -0.45
CCDC88B-209ENST00000494080 A0A0J9YXY3 114 aa12.24□□□□□ -0.45
CCDC88B-209ENST00000494080 ZNF843Q8N446 348 aa12.24□□□□□ -0.45
CCDC88B-209ENST00000494080 C1orf43Q9BWL3 253 aa12.24□□□□□ -0.45
CCDC88B-209ENST00000494080 C20orf203Q8NBC4 194 aa12.24□□□□□ -0.45
CCDC88B-209ENST00000494080 UBL5Q9BZL1 73 aa12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 MRPS12O15235 138 aaKnown RBP12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 CEMP1Q6PRD7 247 aaPredicted RBP12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 ATOX1O00244 68 aa12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 NXPH4O95158 308 aa12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 HAMPP81172 84 aa12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 TRIAP1O43715 76 aa12.23□□□□□ -0.45
CCDC88B-209ENST00000494080 TMEM89A2RUT3 159 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 MED14OSP0DP75 135 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 DNAJC9-AS1A6NH13 148 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 AVPP01185 164 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 IGHV3-30P01768 117 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 IGHV3-30-5P0DP03 117 aa12.22□□□□□ -0.45
CCDC88B-209ENST00000494080 ANKRD17O75179 2603 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-209ENST00000494080 SS18Q15532 418 aa12.21□□□□□ -0.45
CCDC88B-209ENST00000494080 IGHV1-58A0A0C4DH39 117 aa12.21□□□□□ -0.46
CCDC88B-209ENST00000494080 LINC00643Q86TS7 51 aa12.21□□□□□ -0.46
CCDC88B-209ENST00000494080 CLPSL2Q6UWE3 100 aa12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 ZMAT4Q9H898 229 aa12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 Q6YL49 198 aa12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 NFE4Q86UQ8 179 aa12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 SZT2Q5T011 3432 aa12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 RAI1Q7Z5J4 1906 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-209ENST00000494080 M0QXV9 152 aa12.19□□□□□ -0.46
CCDC88B-209ENST00000494080 ZNF22P17026 224 aaPredicted RBP12.19□□□□□ -0.46
CCDC88B-209ENST00000494080 C5orf47Q569G3 176 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 CNFNQ9BYD5 112 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 UBE2DNLQ8IWF7 75 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 MIAQ16674 131 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 C4orf3Q8WVX3 66 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 SPANXCQ9NY87 97 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 MGAQ8IWI9 3026 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 CENPEQ02224 2701 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 VPS13AQ96RL7 3174 aa12.18□□□□□ -0.46
CCDC88B-209ENST00000494080 PCSK5Q92824 1860 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 K7EQG2 157 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 P0DMU3 169 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 FAM231AP0DMU4 169 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 FAM231CP0DMU5 169 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 RBMY1FQ15415 496 aaKnown RBP12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 ZFAND2AQ8N6M9 145 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 GHRHP01286 108 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 Q6ZQT7 251 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 UBE2D1P51668 147 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 ESM1Q9NQ30 184 aa12.17□□□□□ -0.46
CCDC88B-209ENST00000494080 Q9HAA7 133 aa12.16□□□□□ -0.46
CCDC88B-209ENST00000494080 APOC4P55056 127 aa12.16□□□□□ -0.46
CCDC88B-209ENST00000494080 SND1-IT1Q9HBX3 110 aa12.16□□□□□ -0.46
CCDC88B-209ENST00000494080 FLNBO75369 2602 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-209ENST00000494080 TRBV30A0A0K0K1B3 111 aa12.15□□□□□ -0.46
CCDC88B-209ENST00000494080 TMEM223A0PJW6 202 aa12.15□□□□□ -0.46
CCDC88B-209ENST00000494080 UQCRQO14949 82 aa12.15□□□□□ -0.46
CCDC88B-209ENST00000494080 MAP6D1Q9H9H5 199 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms