RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 CCL20P78556 96 aa10.99□□□□□ -0.65
COL9A1-210ENST00000493682 NIT2Q9NQR4 276 aa10.99□□□□□ -0.65
COL9A1-210ENST00000493682 GNG13Q9P2W3 67 aa10.99□□□□□ -0.65
COL9A1-210ENST00000493682 F2Z2F3 143 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 UBE2L6O14933 153 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 BCL2L11O43521 198 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 SULT1A2P50226 295 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 WDR73Q6P4I2 378 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 C15orf56Q8N910 161 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 MANBALQ9NQG1 85 aa10.98□□□□□ -0.65
COL9A1-210ENST00000493682 KANTRA0A1W2PQU2 76 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 PHOX2AO14813 284 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 TRGC1P0CF51 173 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 AMTP48728 403 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 LYZL1Q6UWQ5 148 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 DPH3P1Q9H4G8 78 aa10.97□□□□□ -0.65
COL9A1-210ENST00000493682 RAB19A4D1S5 217 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 GAGE12HA6NDE8 117 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 HMSDA8MTL9 139 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 COX6A2Q02221 97 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 COTL1Q14019 142 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 RGS21Q2M5E4 152 aa10.96□□□□□ -0.65
COL9A1-210ENST00000493682 XKRY2A2RUG3 117 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 IFNA1P01562 189 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 NTF3P20783 257 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 GNG4P50150 75 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 CFAP161Q6P656 301 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 C7orf33Q8WU49 177 aa10.95□□□□□ -0.66
COL9A1-210ENST00000493682 TRAV1-1A0A0B4J248 108 aa10.94□□□□□ -0.66
COL9A1-210ENST00000493682 RPS10P46783 165 aaKnown RBP10.94□□□□□ -0.66
COL9A1-210ENST00000493682 EIF5AP63241 154 aaKnown RBP10.94□□□□□ -0.66
COL9A1-210ENST00000493682 C9orf62Q8N4C0 152 aa10.94□□□□□ -0.66
COL9A1-210ENST00000493682 SMIM12Q96EX1 92 aa10.94□□□□□ -0.66
COL9A1-210ENST00000493682 IGKV3OR2-268A0A0C4DH90 116 aa10.93□□□□□ -0.66
COL9A1-210ENST00000493682 MAJINQ3KP22 176 aa10.93□□□□□ -0.66
COL9A1-210ENST00000493682 HIGD2BQ4VC39 106 aa10.93□□□□□ -0.66
COL9A1-210ENST00000493682 PRSS3P2Q8NHM4 247 aa10.93□□□□□ -0.66
COL9A1-210ENST00000493682 TRBV20OR9-2A0A075B6H5 130 aa10.92□□□□□ -0.66
COL9A1-210ENST00000493682 IGKV2-24A0A0C4DH68 120 aa10.92□□□□□ -0.66
COL9A1-210ENST00000493682 NDUFS6O75380 124 aaKnown RBP10.92□□□□□ -0.66
COL9A1-210ENST00000493682 CTRLP40313 264 aa10.92□□□□□ -0.66
COL9A1-210ENST00000493682 GATD1Q8NB37 220 aa10.92□□□□□ -0.66
COL9A1-210ENST00000493682 GTSF1Q8WW33 167 aa10.92□□□□□ -0.66
COL9A1-210ENST00000493682 CHCHD10Q8WYQ3 142 aaPredicted RBP10.91□□□□□ -0.66
COL9A1-210ENST00000493682 LINC01600Q96MT4 127 aa10.91□□□□□ -0.66
COL9A1-210ENST00000493682 TRAV26-2A0A0B4J265 109 aa10.9□□□□□ -0.66
COL9A1-210ENST00000493682 PDE6DO43924 150 aa10.9□□□□□ -0.66
COL9A1-210ENST00000493682 PRR3P79522 188 aaKnown RBP10.9□□□□□ -0.66
COL9A1-210ENST00000493682 MEF2BQ02080 365 aaPredicted RBP10.9□□□□□ -0.66
COL9A1-210ENST00000493682 TWIST1Q15672 202 aa10.9□□□□□ -0.66
COL9A1-210ENST00000493682 STPG4Q8N801 248 aa10.9□□□□□ -0.66
COL9A1-210ENST00000493682 BIN3Q9NQY0 253 aa10.9□□□□□ -0.66
COL9A1-210ENST00000493682 TNXBP22105 4242 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 GVQW2A0A096LPI5 108 aaPredicted RBP10.89□□□□□ -0.67
COL9A1-210ENST00000493682 AMMECR1LQ6DCA0 310 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 Q6ZNX1 250 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 NUDT10Q8NFP7 164 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 NUDT11Q96G61 164 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 CNFNQ9BYD5 112 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 MED9Q9NWA0 146 aa10.89□□□□□ -0.67
COL9A1-210ENST00000493682 TEX46H3BTG2 121 aa10.88□□□□□ -0.67
COL9A1-210ENST00000493682 RNASEKQ6P5S7 137 aaKnown RBP10.88□□□□□ -0.67
COL9A1-210ENST00000493682 LYPD6BQ8NI32 183 aa10.88□□□□□ -0.67
COL9A1-210ENST00000493682 RNF213Q63HN8 5207 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.87□□□□□ -0.67
COL9A1-210ENST00000493682 A0A096LNI7 61 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 IGKV2-29A2NJV5 120 aaPredicted RBP10.87□□□□□ -0.67
COL9A1-210ENST00000493682 NCR2O95944 276 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 GHRHP01286 108 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 ODF1Q14990 250 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 RPL39LQ96EH5 51 aaKnown RBP10.87□□□□□ -0.67
COL9A1-210ENST00000493682 LRP2P98164 4655 aa10.87□□□□□ -0.67
COL9A1-210ENST00000493682 H7C423 109 aa10.86□□□□□ -0.67
COL9A1-210ENST00000493682 FGF6P10767 208 aa10.86□□□□□ -0.67
COL9A1-210ENST00000493682 FOXI1Q12951 378 aa10.86□□□□□ -0.67
COL9A1-210ENST00000493682 RPP21Q9H633 154 aaKnown RBP10.86□□□□□ -0.67
COL9A1-210ENST00000493682 APCSP02743 223 aa10.85□□□□□ -0.67
COL9A1-210ENST00000493682 BCL2P10415 239 aa10.85□□□□□ -0.67
COL9A1-210ENST00000493682 EIF5AL1Q6IS14 154 aaKnown RBP10.85□□□□□ -0.67
COL9A1-210ENST00000493682 RNASE7Q9H1E1 156 aaKnown RBP10.85□□□□□ -0.67
COL9A1-210ENST00000493682 FOXA3P55318 350 aaPredicted RBP10.84□□□□□ -0.67
COL9A1-210ENST00000493682 A0A0J9YXV3 536 aa10.83□□□□□ -0.68
COL9A1-210ENST00000493682 K7EN84 100 aa10.83□□□□□ -0.68
COL9A1-210ENST00000493682 XCL1P47992 114 aa10.83□□□□□ -0.68
COL9A1-210ENST00000493682 OR5A1Q8NGJ0 315 aa10.83□□□□□ -0.68
COL9A1-210ENST00000493682 LINC00474Q9P2X8 69 aa10.83□□□□□ -0.68
COL9A1-210ENST00000493682 SDHAF1A6NFY7 115 aa10.82□□□□□ -0.68
COL9A1-210ENST00000493682 ZNF25P17030 456 aaPredicted RBP10.82□□□□□ -0.68
COL9A1-210ENST00000493682 TEX261Q6UWH6 196 aa10.82□□□□□ -0.68
COL9A1-210ENST00000493682 SPINK6Q6UWN8 80 aa10.82□□□□□ -0.68
COL9A1-210ENST00000493682 SMIM15Q7Z3B0 74 aa10.82□□□□□ -0.68
COL9A1-210ENST00000493682 LINC00526Q96FQ7 95 aa10.82□□□□□ -0.68
COL9A1-210ENST00000493682 FAM231BA6NCW3 169 aa10.81□□□□□ -0.68
COL9A1-210ENST00000493682 KRTAP10-8P60410 259 aa10.81□□□□□ -0.68
COL9A1-210ENST00000493682 OCC1Q8TAD7 63 aa10.81□□□□□ -0.68
COL9A1-210ENST00000493682 IGHV1-58A0A0C4DH39 117 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 LINC00959A0A1B0GUT2 108 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 I3L3M4 83 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 CCL25O15444 150 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 REG3GQ6UW15 175 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms