RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HHLA3Q9XRX5 114 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 IGHV4OR15-8A0A075B7B6 117 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 A0A087WW49 117 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TRBV10-2A0A0K0K1G8 114 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 VPREB3Q9UKI3 123 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TRAV13-1A0A0B4J241 112 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 CFHR3Q02985 330 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 MUSTN1Q8IVN3 82 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 MYCNOSP40205 109 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 C9orf139Q6ZV77 190 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 NBEAL1Q6ZS30 2694 aa8.15□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 A0A096LNJ9 63 aa8.15□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TRAV12-1A0A0B4J245 112 aa8.15□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 GATD1Q8NB37 220 aa8.15□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 HERVK_113P63121 156 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 PIFOQ8TCI5 191 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 WI2-2373I1.2A0A1W2PRP0 233 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 PPDPFQ9H3Y8 114 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TRBV7-3A0A075B6L6 115 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 SPANXCQ9NY87 97 aa8.14□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 DUSP14O95147 198 aaKnown RBP8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 CRIP1P50238 77 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 SMAD5-AS1Q9Y6J3 95 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 INAFM2P0DMQ5 153 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 HTN3P15516 51 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ZNF625Q96I27 306 aaPredicted RBP8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGHV7-4-1A0A0J9YVY3 117 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 C11orf86A6NJI1 115 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 NDUFA4O00483 81 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 LINC00694P0DN24 101 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ZNF876PQ49A33 203 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 C19orf54Q5BKX5 351 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 RPL39LQ96EH5 51 aaKnown RBP8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 JPT2Q9H910 190 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TNFRSF18Q9Y5U5 241 aa8.13□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 INS-IGF2F8WCM5 200 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 UQCRQO14949 82 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGHG2P01859 326 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 STHQ8IWL8 128 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 BAALCQ8WXS3 180 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TMEM141Q96I45 108 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ACYP1P07311 99 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 PHLDA1Q8WV24 401 aaPredicted RBP8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 A6NDX4 124 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGHV4-31P0DP07 118 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 U3KQK5 164 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 A0A1B0GX51 115 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 SDHAF1A6NFY7 115 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 NDUFA12Q9UI09 145 aa8.12□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 CSMD2Q7Z408 3487 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TRBV6-1A0A0K0K1D8 114 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGLC6P0CF74 106 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 F8W735 103 aaPredicted RBP8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 H3BT86 120 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 OVOL1O14753 267 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 MRPS12O15235 138 aaKnown RBP8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 CLEC2BQ92478 149 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 DNAJC30Q96LL9 226 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ATOX1O00244 68 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 NDUFA7O95182 113 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 C3orf22Q8N5N4 141 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 Q8N6K4 173 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 CITED2Q99967 270 aaPredicted RBP8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ICOSQ9Y6W8 199 aa8.11□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 NOTCH1P46531 2555 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 SMIM9A6NGZ8 99 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 GAS8-AS1O95177 125 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 C20orf173Q96LM9 149 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGHV3-38A0A0C4DH36 116 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 CRLF1O75462 422 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 RBAKDNA6NC62 111 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 IGLV2-11P01706 119 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 PEMTQ9UBM1 199 aa8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 SETXQ7Z333 2677 aaKnown RBP8.1□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 A0A0J9YY99 117 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 RNASE13Q5GAN3 156 aaKnown RBP8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TOMM7Q9P0U1 55 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TRGV2A0A075B6R0 118 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 LGALS9O00182 355 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 TOMM6Q96B49 74 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 ZFAND3Q9H8U3 227 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 Q6Q795 121 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 PRO0461Q9UI25 63 aa8.09□□□□□ -1.11
MSH5-SAPCD1-207ENST00000493662 STAB1Q9NY15 2570 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 TRGV1A0A0A0MS02 117 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 EBI3Q14213 229 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 MUC4Q99102 2169 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 IGKV3D-7A0A0C4DH55 119 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 TMEM61Q8N0U2 210 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 hADV29S1A0JD25 119 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 BAALC-AS2P0C853 105 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RPL39P62891 51 aaKnown RBP8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 LINC00643Q86TS7 51 aa8.08□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 LINC01619G3V211 115 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 IGHV3-33P01772 117 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 SMCPP49901 116 aaPredicted RBP8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 RNF185Q96GF1 192 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 A0A0B4J2C4 111 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 LOC107984640A0A0U1RRK4 108 aa8.07□□□□□ -1.12
MSH5-SAPCD1-207ENST00000493662 SLC25A29Q8N8R3 303 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms