RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 RAB5CP51148 216 aa7.48□□□□□ -1.21
COL6A3-213ENST00000493475 RASL11AQ6T310 242 aa7.48□□□□□ -1.21
COL6A3-213ENST00000493475 KRTAP4-11Q9BYQ6 195 aa7.48□□□□□ -1.21
COL6A3-213ENST00000493475 GNG13Q9P2W3 67 aa7.48□□□□□ -1.21
COL6A3-213ENST00000493475 PKIGQ9Y2B9 76 aa7.48□□□□□ -1.21
COL6A3-213ENST00000493475 DNAH8Q96JB1 4490 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 M0QY20 66 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 PDE6DO43924 150 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 CNBPP62633 177 aaKnown RBP7.47□□□□□ -1.21
COL6A3-213ENST00000493475 COTL1Q14019 142 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 NTM-AS1Q6ZSK4 140 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 SMIM15Q7Z3B0 74 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 C7orf33Q8WU49 177 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 PGLYRP4Q96LB8 373 aa7.47□□□□□ -1.21
COL6A3-213ENST00000493475 IGLV10-54A0A075B6I4 117 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 AMTP48728 403 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 NKX2-5P52952 324 aaPredicted RBP7.46□□□□□ -1.22
COL6A3-213ENST00000493475 CENPWQ5EE01 88 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 SUMO4Q6EEV6 95 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 Q6ZRU5 148 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 C11orf52Q96A22 123 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 NIT2Q9NQR4 276 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 KIF25-AS1Q9Y6Z4 181 aa7.46□□□□□ -1.22
COL6A3-213ENST00000493475 G3V3Q6 166 aa7.45□□□□□ -1.22
COL6A3-213ENST00000493475 TAGLN2P37802 199 aaKnown RBP7.45□□□□□ -1.22
COL6A3-213ENST00000493475 KRTAP10-4P60372 401 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-213ENST00000493475 AMMECR1LQ6DCA0 310 aa7.45□□□□□ -1.22
COL6A3-213ENST00000493475 SDIM1Q6ZPB5 146 aa7.45□□□□□ -1.22
COL6A3-213ENST00000493475 TRAV1-1A0A0B4J248 108 aa7.44□□□□□ -1.22
COL6A3-213ENST00000493475 IGLC6P0CF74 106 aa7.44□□□□□ -1.22
COL6A3-213ENST00000493475 CCL20P78556 96 aa7.44□□□□□ -1.22
COL6A3-213ENST00000493475 SMLR1H3BR10 107 aa7.43□□□□□ -1.22
COL6A3-213ENST00000493475 MEF2BQ02080 365 aaPredicted RBP7.43□□□□□ -1.22
COL6A3-213ENST00000493475 TWIST1Q15672 202 aa7.43□□□□□ -1.22
COL6A3-213ENST00000493475 TEX261Q6UWH6 196 aa7.43□□□□□ -1.22
COL6A3-213ENST00000493475 MED9Q9NWA0 146 aa7.43□□□□□ -1.22
COL6A3-213ENST00000493475 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.43□□□□□ -1.22
COL6A3-213ENST00000493475 NCR2O95944 276 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 NTF3P20783 257 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 Q6ZNX1 250 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 C20orf203Q8NBC4 194 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 BTF3L4Q96K17 158 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 LINC00474Q9P2X8 69 aa7.42□□□□□ -1.22
COL6A3-213ENST00000493475 C19orf71A6NCJ1 209 aa7.41□□□□□ -1.22
COL6A3-213ENST00000493475 H7C423 109 aa7.41□□□□□ -1.22
COL6A3-213ENST00000493475 CIRBPQ14011 172 aaKnown RBP7.41□□□□□ -1.22
COL6A3-213ENST00000493475 KRTAP26-1Q6PEX3 210 aa7.41□□□□□ -1.22
COL6A3-213ENST00000493475 LYZL1Q6UWQ5 148 aa7.41□□□□□ -1.22
COL6A3-213ENST00000493475 TMEM101Q96IK0 257 aa7.41□□□□□ -1.22
COL6A3-213ENST00000493475 IGLV4-60A0A075B6I1 120 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 IGKV3OR2-268A0A0C4DH90 116 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 APCSP02743 223 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 RPS10P46783 165 aaKnown RBP7.4□□□□□ -1.22
COL6A3-213ENST00000493475 RNASEKQ6P5S7 137 aaKnown RBP7.4□□□□□ -1.22
COL6A3-213ENST00000493475 C9orf62Q8N4C0 152 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 BORCS7Q96B45 105 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 FAM210AQ96ND0 272 aa7.4□□□□□ -1.22
COL6A3-213ENST00000493475 A0A087WYN8 130 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 RAB19A4D1S5 217 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 GAGE12HA6NDE8 117 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 NDUFS6O75380 124 aaKnown RBP7.39□□□□□ -1.23
COL6A3-213ENST00000493475 BCL2P10415 239 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 ZNF25P17030 456 aaPredicted RBP7.39□□□□□ -1.23
COL6A3-213ENST00000493475 CTRLP40313 264 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 SPACA4Q8TDM5 124 aa7.39□□□□□ -1.23
COL6A3-213ENST00000493475 RPP21Q9H633 154 aaKnown RBP7.39□□□□□ -1.23
COL6A3-213ENST00000493475 HMCN2Q8NDA2 5059 aa7.38□□□□□ -1.23
COL6A3-213ENST00000493475 GTSF1Q8WW33 167 aa7.38□□□□□ -1.23
COL6A3-213ENST00000493475 hCG_2014768A0A024R1R8 64 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 GHRHP01286 108 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 SMAGPQ0VAQ4 97 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 MAJINQ3KP22 176 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 NUDT10Q8NFP7 164 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 CHCHD10Q8WYQ3 142 aaPredicted RBP7.37□□□□□ -1.23
COL6A3-213ENST00000493475 NUDT11Q96G61 164 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 CNFNQ9BYD5 112 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 PLAC8Q9NZF1 115 aa7.37□□□□□ -1.23
COL6A3-213ENST00000493475 LRP1Q07954 4544 aaKnown RBP7.37□□□□□ -1.23
COL6A3-213ENST00000493475 A0A1B0GVG6 124 aa7.36□□□□□ -1.23
COL6A3-213ENST00000493475 PANO1I0J062 215 aa7.36□□□□□ -1.23
COL6A3-213ENST00000493475 PMCHP20382 165 aa7.36□□□□□ -1.23
COL6A3-213ENST00000493475 HNRNPA3P51991 378 aaKnown RBP7.36□□□□□ -1.23
COL6A3-213ENST00000493475 COX6A2Q02221 97 aa7.36□□□□□ -1.23
COL6A3-213ENST00000493475 GVQW2A0A096LPI5 108 aaPredicted RBP7.35□□□□□ -1.23
COL6A3-213ENST00000493475 IGKV2-24A0A0C4DH68 120 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 A8MWL6 223 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 I3L3M4 83 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 PHOX2AO14813 284 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 CHTF8P0CG12 524 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 FGF6P10767 208 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 SS18Q15532 418 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 HIGD2BQ4VC39 106 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 SLC51BQ86UW2 128 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 GATD1Q8NB37 220 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 OR5A1Q8NGJ0 315 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 GFRA4Q9GZZ7 299 aa7.35□□□□□ -1.23
COL6A3-213ENST00000493475 IGHV1-58A0A0C4DH39 117 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 SDHAF1A6NFY7 115 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 ZNF561-AS1K7EIQ3 104 aa7.34□□□□□ -1.23
COL6A3-213ENST00000493475 REG3GQ6UW15 175 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms