RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SEC11CQ9BY50 192 aa4.57□□□□□ -1.68
VPS52-219ENST00000493379 DPH3P1Q9H4G8 78 aa4.57□□□□□ -1.68
VPS52-219ENST00000493379 A0A087WWC5 75 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 MUC21A0A0G2JKD1 596 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 MUC21A0A140T8X8 626 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 A0A1B0GUT8 65 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 PPP1R2P9O14990 202 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 RTL8CO15255 209 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 ADCYAP1P18509 176 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 KRTAP15-1Q3LI76 137 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 LINC01556Q5JQF7 62 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 GATD1Q8NB37 220 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 NEXN-AS1Q8NBZ9 246 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 PRSS3P2Q8NHM4 247 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 TMEM191AQ9H0A3 160 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 TMEM242Q9NWH2 141 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 NAT8BQ9UHF3 227 aa4.56□□□□□ -1.68
VPS52-219ENST00000493379 TRBV6-5A0A0K0K1A5 114 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 A0A1B0GW15 77 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 A0A1B0GXF2 115 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 H7C1H1 209 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 SIVA1O15304 175 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 SMIM17P0DL12 118 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 RPL36AP83881 106 aaKnown RBP4.55□□□□□ -1.68
VPS52-219ENST00000493379 TWIST1Q15672 202 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 ADIRFQ15847 76 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 FAM74A4Q5TZK3 123 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 DAZ4Q86SG3 579 aaKnown RBP4.55□□□□□ -1.68
VPS52-219ENST00000493379 UBE2DNLQ8IWF7 75 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 MPLKIPQ8TAP9 179 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 RPL36ALQ969Q0 106 aaKnown RBP4.55□□□□□ -1.68
VPS52-219ENST00000493379 RNF185Q96GF1 192 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 PGLYRP4Q96LB8 373 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 IMMP2LQ96T52 175 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 CHCHD7Q9BUK0 85 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 KRTAP1-5Q9BYS1 174 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 NIT2Q9NQR4 276 aa4.55□□□□□ -1.68
VPS52-219ENST00000493379 DAZ3Q9NR90 486 aaKnown RBP4.55□□□□□ -1.68
VPS52-219ENST00000493379 CARHSP1Q9Y2V2 147 aaKnown RBP4.55□□□□□ -1.68
VPS52-219ENST00000493379 IGHV3-38A0A0C4DH36 116 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 EPM2AB3EWF7 344 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 MT-ND4LP03901 98 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 RAB4AP20338 218 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 GAGE1Q13065 139 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 GAGE4Q13068 117 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 GAGE5Q13069 117 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 RIGQ13278 110 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 TMEM97Q5BJF2 176 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 TTC32Q5I0X7 151 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 RASL11AQ6T310 242 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 Q6ZRN7 208 aaPredicted RBP4.54□□□□□ -1.68
VPS52-219ENST00000493379 NTM-AS1Q6ZSK4 140 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 TPPP3Q9BW30 176 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 LRP2P98164 4655 aa4.54□□□□□ -1.68
VPS52-219ENST00000493379 TRBV24-1A0A075B6N3 115 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 TRAV9-2A0A087WT02 112 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 TRBV6-8A0A0A6YYG3 113 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 TRAV8-6A0A0B4J262 113 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 IBA57-AS1B1ANH7 110 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 POLR2KP53803 58 aaKnown RBP4.53□□□□□ -1.68
VPS52-219ENST00000493379 ZNF56Q15929 161 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 IQCJQ1A5X6 159 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 ATP5L2Q7Z4Y8 100 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 COMMD7Q86VX2 200 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 WFDC10BQ8IUB3 73 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 C10orf126Q8N4M7 172 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 MRAP2Q96G30 205 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 KRTAP9-9Q9BYP9 154 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 KRTAP9-4Q9BYQ2 154 aa4.53□□□□□ -1.68
VPS52-219ENST00000493379 IGLV2-18A0A075B6J9 118 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 TRAV9-1A0A075B6T8 112 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 C16orf90A8MZG2 172 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 F8W036 122 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 PPP1R17O96001 155 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 SSTP61278 116 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 RPL32P62910 135 aaKnown RBP4.52□□□□□ -1.69
VPS52-219ENST00000493379 LAGE3Q14657 143 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 C1orf134Q5TEV5 83 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 FAM104BQ5XKR9 115 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 SMIM15Q7Z3B0 74 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 NIT1Q86X76 327 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 C6orf223Q8N319 242 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 BORCS7Q96B45 105 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 TNFRSF18Q9Y5U5 241 aa4.52□□□□□ -1.69
VPS52-219ENST00000493379 TRBV27A0A0K0K1C4 114 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 A0A1B0GUV1 79 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 M0R2N4 97 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 NCR2O95944 276 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 S100A8P05109 93 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 HBBP68871 147 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 ATRAIDQ6UW56 229 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 URB1-AS1Q96HZ7 61 aa4.51□□□□□ -1.69
VPS52-219ENST00000493379 IGLV5-39A0A0G2JS06 123 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 PHOX2AO14813 284 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 GAS8-AS1O95177 125 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 PPBPP02775 128 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 MGPP08493 103 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 PKIAP61925 76 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 OR10J3Q5JRS4 329 aa4.5□□□□□ -1.69
VPS52-219ENST00000493379 NFE4Q86UQ8 179 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms