RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NBEAQ8NFP9 2946 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 IGF2RP11717 2491 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 MUC4Q99102 2169 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 BPTFQ12830 3046 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 TRBV6-4A0A1B0GX49 114 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 H3BRM9 83 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 DEFB133Q30KQ1 61 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 RPL13AP3Q6NVV1 102 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 OR10AG1Q8NH19 301 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 APC2O95996 2303 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 ACACAQ13085 2346 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 PTPRQQ9UMZ3 2332 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 DSPP15924 2871 aaKnown RBP1.99□□□□□ -2.09
VPS13A-212ENST00000493341 IGSF10Q6WRI0 2623 aa1.99□□□□□ -2.09
VPS13A-212ENST00000493341 TNRC6AQ8NDV7 1962 aaKnown RBP1.99□□□□□ -2.09
VPS13A-212ENST00000493341 URB1O60287 2271 aaKnown RBP1.99□□□□□ -2.09
VPS13A-212ENST00000493341 MIF4GDA9UHW6 222 aaKnown RBP1.98□□□□□ -2.09
VPS13A-212ENST00000493341 ZNF670-ZNF695F2Z2N8 137 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 APOC4-APOC2K7ER74 178 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 SNRNP200O75643 2136 aaKnown RBP1.98□□□□□ -2.09
VPS13A-212ENST00000493341 APOC2P02655 101 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 LSM2Q9Y333 95 aaKnown RBP1.98□□□□□ -2.09
VPS13A-212ENST00000493341 BBIP1A8MTZ0 92 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 NCR2O95944 276 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 DNAJB13P59910 316 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 C5orf17Q8NAS9 161 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 ARL11Q969Q4 196 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 MED9Q9NWA0 146 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 COL6A6A6NMZ7 2263 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 SPEGQ15772 3267 aa1.98□□□□□ -2.09
VPS13A-212ENST00000493341 GNG7O60262 68 aa1.97□□□□□ -2.09
VPS13A-212ENST00000493341 RRAS2P62070 204 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-212ENST00000493341 MPV17LQ2QL34 196 aa1.97□□□□□ -2.09
VPS13A-212ENST00000493341 KRTAP13-1Q8IUC0 172 aa1.97□□□□□ -2.09
VPS13A-212ENST00000493341 OR10AC1Q8NH08 325 aa1.97□□□□□ -2.09
VPS13A-212ENST00000493341 ZFHX4Q86UP3 3567 aa1.97□□□□□ -2.09
VPS13A-212ENST00000493341 FREM2Q5SZK8 3169 aa1.96□□□□□ -2.09
VPS13A-212ENST00000493341 IZUMO2Q6UXV1 221 aa1.96□□□□□ -2.09
VPS13A-212ENST00000493341 CCL25O15444 150 aa1.96□□□□□ -2.1
VPS13A-212ENST00000493341 TPST1O60507 370 aa1.96□□□□□ -2.1
VPS13A-212ENST00000493341 CFAP46Q8IYW2 2715 aa1.96□□□□□ -2.1
VPS13A-212ENST00000493341 UQCRHLA0A096LP55 91 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 IGKV3D-7A0A0C4DH55 119 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 IGKV3OR2-268A0A0C4DH90 116 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 IFITM5A6NNB3 132 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 CDC42EP2O14613 210 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 UQCRHP07919 91 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 PIRTP0C851 137 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 ASB16-AS1Q495Z4 193 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 SPRNQ5BIV9 151 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 SNX29P2Q8IUI4 249 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 CR1P17927 2039 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 UBR5O95071 2799 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-212ENST00000493341 CFAP47Q6ZTR5 3102 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 ZFYVE26Q68DK2 2539 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 AHCTF1Q8WYP5 2266 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 ATMQ13315 3056 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 BSNQ9UPA5 3926 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 MUC5BQ9HC84 5762 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-212ENST00000493341 A0A1B0GV90 55 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 A6NN06 94 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 FAM25AB3EWG3 89 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 FAM25CB3EWG5 89 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 FAM25GB3EWG6 89 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 KALRNO60229 2985 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 SELENOWP63302 87 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 PLGLB1Q02325 96 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 MGAQ8IWI9 3026 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 MED13Q9UHV7 2174 aa1.95□□□□□ -2.1
VPS13A-212ENST00000493341 WDFY3Q8IZQ1 3526 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 GCN1Q92616 2671 aaKnown RBP1.94□□□□□ -2.1
VPS13A-212ENST00000493341 ASPMQ8IZT6 3477 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 SPTBP11277 2137 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 TENM4Q6N022 2769 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 J3QKU1 62 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 NUPR1O60356 82 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 PPYP01298 95 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 ZNF25P17030 456 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-212ENST00000493341 C3orf62Q6ZUJ4 267 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 C1orf54Q8WWF1 131 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 LCN9Q8WX39 176 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 LINC00470Q9BZP3 86 aa1.94□□□□□ -2.1
VPS13A-212ENST00000493341 EXPH5Q8NEV8 1989 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 CHD3Q12873 2000 aaKnown RBP1.93□□□□□ -2.1
VPS13A-212ENST00000493341 LAMA5O15230 3695 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 GEMIN2O14893 280 aaKnown RBP1.93□□□□□ -2.1
VPS13A-212ENST00000493341 YPEL1O60688 119 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 KLF7O75840 302 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-212ENST00000493341 UNQ6190/PRO20217Q6UXQ8 127 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 TCTEX1D1Q8N7M0 179 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 MYO18BQ8IUG5 2567 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 HELZ2Q9BYK8 2649 aaKnown RBP1.93□□□□□ -2.1
VPS13A-212ENST00000493341 TRBV20-1A0A075B6N2 111 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 TRBV6-7A0A0A0MS04 114 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 CCL22O00626 93 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 PRB1P04280 392 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 CGREF1Q99674 301 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 WFDC10AQ9H1F0 79 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 TMEM14CQ9P0S9 112 aa1.93□□□□□ -2.1
VPS13A-212ENST00000493341 NOP16Q9Y3C1 178 aaKnown RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms