RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 MRPL18Q9H0U6 180 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 A0A087WX48 190 aa13.58□□□□□ -0.24
SHROOM3-209ENST00000490690 FABP9Q0Z7S8 132 aa13.58□□□□□ -0.24
SHROOM3-209ENST00000490690 WFDC10BQ8IUB3 73 aa13.58□□□□□ -0.24
SHROOM3-209ENST00000490690 YPEL4Q96NS1 127 aa13.58□□□□□ -0.24
SHROOM3-209ENST00000490690 SMIM2Q9BVW6 85 aa13.58□□□□□ -0.24
SHROOM3-209ENST00000490690 NBDYA0A0U1RRE5 68 aa13.57□□□□□ -0.24
SHROOM3-209ENST00000490690 PRSS47A8MTI9 375 aa13.57□□□□□ -0.24
SHROOM3-209ENST00000490690 K7EMI3 77 aa13.57□□□□□ -0.24
SHROOM3-209ENST00000490690 NPYP01303 97 aa13.57□□□□□ -0.24
SHROOM3-209ENST00000490690 TMEM18Q96B42 140 aa13.57□□□□□ -0.24
SHROOM3-209ENST00000490690 ATP6V1G1O75348 118 aa13.56□□□□□ -0.24
SHROOM3-209ENST00000490690 GAS8-AS1O95177 125 aa13.56□□□□□ -0.24
SHROOM3-209ENST00000490690 NIT1Q86X76 327 aa13.56□□□□□ -0.24
SHROOM3-209ENST00000490690 TMEM262E9PQX1 116 aa13.55□□□□□ -0.24
SHROOM3-209ENST00000490690 RAB5AP20339 215 aa13.55□□□□□ -0.24
SHROOM3-209ENST00000490690 NTM-AS1Q6ZSK4 140 aa13.55□□□□□ -0.24
SHROOM3-209ENST00000490690 NXT2Q9NPJ8 142 aaKnown RBP13.55□□□□□ -0.24
SHROOM3-209ENST00000490690 G0S2P27469 103 aa13.54□□□□□ -0.24
SHROOM3-209ENST00000490690 IGLV2-18A0A075B6J9 118 aa13.53□□□□□ -0.24
SHROOM3-209ENST00000490690 LAGE3Q14657 143 aa13.53□□□□□ -0.24
SHROOM3-209ENST00000490690 TSHBP01222 138 aa13.52□□□□□ -0.25
SHROOM3-209ENST00000490690 ALKBH7Q9BT30 221 aaPredicted RBP13.52□□□□□ -0.25
SHROOM3-209ENST00000490690 DNAH1Q9P2D7 4330 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 A0A1B0GUV1 79 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 ZNF25P17030 456 aaPredicted RBP13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 KIAA1644Q3SXP7 199 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 NFE4Q86UQ8 179 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 Q8N8P6 123 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 LYSTQ99698 3801 aa13.51□□□□□ -0.25
SHROOM3-209ENST00000490690 ORMDL2Q53FV1 153 aa13.5□□□□□ -0.25
SHROOM3-209ENST00000490690 AMMECR1LQ6DCA0 310 aa13.5□□□□□ -0.25
SHROOM3-209ENST00000490690 Q6ZR54 194 aa13.5□□□□□ -0.25
SHROOM3-209ENST00000490690 VPS13DQ5THJ4 4388 aa13.5□□□□□ -0.25
SHROOM3-209ENST00000490690 LINC01549A6NIU2 74 aa13.49□□□□□ -0.25
SHROOM3-209ENST00000490690 ESDP10768 282 aa13.49□□□□□ -0.25
SHROOM3-209ENST00000490690 PRSS3P2Q8NHM4 247 aa13.49□□□□□ -0.25
SHROOM3-209ENST00000490690 TMEM101Q96IK0 257 aa13.49□□□□□ -0.25
SHROOM3-209ENST00000490690 TRAV8-3A0A0A6YYJ7 113 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 LOC389332A0A1B0GUA5 103 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 IGHV3-30P01768 117 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 IGHV3-33P01772 117 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 IGHV3-30-3P0DP02 117 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 IGHV3-30-5P0DP03 117 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 Q0VG73 95 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 GAGE6Q13070 117 aa13.48□□□□□ -0.25
SHROOM3-209ENST00000490690 COLCA2A8K830 154 aa13.47□□□□□ -0.25
SHROOM3-209ENST00000490690 IBA57-AS1B1ANH7 110 aa13.47□□□□□ -0.25
SHROOM3-209ENST00000490690 CRPP02741 224 aa13.47□□□□□ -0.25
SHROOM3-209ENST00000490690 RAB5BP61020 215 aa13.47□□□□□ -0.25
SHROOM3-209ENST00000490690 RMI2Q96E14 147 aa13.47□□□□□ -0.25
SHROOM3-209ENST00000490690 M0R2N4 97 aa13.46□□□□□ -0.25
SHROOM3-209ENST00000490690 MPV17L2Q567V2 206 aa13.46□□□□□ -0.25
SHROOM3-209ENST00000490690 C1orf134Q5TEV5 83 aa13.46□□□□□ -0.25
SHROOM3-209ENST00000490690 C6orf223Q8N319 242 aa13.46□□□□□ -0.25
SHROOM3-209ENST00000490690 COX11Q9Y6N1 276 aa13.46□□□□□ -0.25
SHROOM3-209ENST00000490690 RBX1P62877 108 aa13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 DGAT2L7PQ6IED9 249 aa13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 RNASEKQ6P5S7 137 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 FA2HQ7L5A8 372 aa13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 MRPL52Q86TS9 123 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 C20orf203Q8NBC4 194 aa13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 CSDC2Q9Y534 153 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-209ENST00000490690 SACSQ9NZJ4 4579 aa13.44□□□□□ -0.26
SHROOM3-209ENST00000490690 ANGP03950 147 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-209ENST00000490690 FGF6P10767 208 aa13.44□□□□□ -0.26
SHROOM3-209ENST00000490690 TIMM21Q9BVV7 248 aa13.44□□□□□ -0.26
SHROOM3-209ENST00000490690 KMT2CQ8NEZ4 4911 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-209ENST00000490690 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 IGKV2-29A2NJV5 120 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 SCO1O75880 301 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 IFI27P40305 119 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 OR5A1Q8NGJ0 315 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 DEFB104AQ8WTQ1 72 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 TM2D2Q9BX73 214 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 SPANXA1Q9NS26 97 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 KLK12Q9UKR0 248 aa13.43□□□□□ -0.26
SHROOM3-209ENST00000490690 MIAQ16674 131 aa13.42□□□□□ -0.26
SHROOM3-209ENST00000490690 CYSLTR1Q9Y271 337 aa13.42□□□□□ -0.26
SHROOM3-209ENST00000490690 DNAH6Q9C0G6 4158 aa13.42□□□□□ -0.26
SHROOM3-209ENST00000490690 TRGC2P03986 189 aa13.41□□□□□ -0.26
SHROOM3-209ENST00000490690 Q8N976 141 aa13.41□□□□□ -0.26
SHROOM3-209ENST00000490690 C18orf32Q8TCD1 76 aa13.41□□□□□ -0.26
SHROOM3-209ENST00000490690 AP5S1Q9NUS5 200 aa13.41□□□□□ -0.26
SHROOM3-209ENST00000490690 LINC01546A6NGU7 62 aa13.4□□□□□ -0.26
SHROOM3-209ENST00000490690 NPSP0C0P6 89 aa13.4□□□□□ -0.26
SHROOM3-209ENST00000490690 LINC00336Q6ZUF6 198 aa13.4□□□□□ -0.26
SHROOM3-209ENST00000490690 KRTAP1-5Q9BYS1 174 aa13.4□□□□□ -0.26
SHROOM3-209ENST00000490690 TRAV8-4A0A0B4J246 113 aa13.39□□□□□ -0.27
SHROOM3-209ENST00000490690 UBE2WQ96B02 151 aa13.39□□□□□ -0.27
SHROOM3-209ENST00000490690 PRR34Q9NV39 138 aa13.39□□□□□ -0.27
SHROOM3-209ENST00000490690 KMT2AQ03164 3969 aa13.38□□□□□ -0.27
SHROOM3-209ENST00000490690 LINC00614P0C842 121 aa13.38□□□□□ -0.27
SHROOM3-209ENST00000490690 PAPPA-AS1Q5QFB9 102 aa13.38□□□□□ -0.27
SHROOM3-209ENST00000490690 UBE2D4Q9Y2X8 147 aa13.38□□□□□ -0.27
SHROOM3-209ENST00000490690 PYGO1Q9Y3Y4 419 aa13.38□□□□□ -0.27
SHROOM3-209ENST00000490690 REG3AQ06141 175 aa13.37□□□□□ -0.27
SHROOM3-209ENST00000490690 C2orf66Q6UXQ4 117 aa13.37□□□□□ -0.27
SHROOM3-209ENST00000490690 LINC00269Q8N2A0 174 aa13.37□□□□□ -0.27
SHROOM3-209ENST00000490690 CHCHD1Q96BP2 118 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms