RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 ARHGEF17Q96PE2 2063 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-228ENST00000490135 TRAV7A0A075B6U4 112 aa5.51□□□□□ -1.53
SYNE1-228ENST00000490135 A8MZ25 164 aa5.51□□□□□ -1.53
SYNE1-228ENST00000490135 C11orf53Q8IXP5 236 aa5.51□□□□□ -1.53
SYNE1-228ENST00000490135 Q6ZS46 218 aa5.51□□□□□ -1.53
SYNE1-228ENST00000490135 NCKAP5O14513 1909 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 PHF3Q92576 2039 aaKnown RBP5.5□□□□□ -1.53
SYNE1-228ENST00000490135 RPL39P62891 51 aaKnown RBP5.5□□□□□ -1.53
SYNE1-228ENST00000490135 C4orf3Q8WVX3 66 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 MIFP14174 115 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 EBI3Q14213 229 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 REG3AQ06141 175 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 COL4A3Q01955 1670 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 ANAPC1Q9H1A4 1944 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 DOCK9Q9BZ29 2069 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 LY6G6EA0A0G2JKS1 128 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 P0C879 139 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 KIF26AQ9ULI4 1882 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-228ENST00000490135 TDRD6O60522 2096 aaKnown RBP5.5□□□□□ -1.53
SYNE1-228ENST00000490135 SPTA1P02549 2419 aa5.5□□□□□ -1.53
SYNE1-228ENST00000490135 TMEM223A0PJW6 202 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 X6R8D5 127 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 WT1P19544 449 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-228ENST00000490135 Q6ZPA2 131 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 FREM3P0C091 2139 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-228ENST00000490135 WFDC13Q8IUB5 93 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 C1orf158Q8N1D5 194 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 LINC00269Q8N2A0 174 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 C2orf48Q96LS8 159 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 AKAP6Q13023 2319 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 PCNTO95613 3336 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 IGFL3Q6UXB1 125 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 Q6ZSR3 168 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 RNF185Q96GF1 192 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 KAAG1Q9UBP8 84 aa5.49□□□□□ -1.53
SYNE1-228ENST00000490135 TRIOBPQ9H2D6 2365 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 PSPHP1O15172 72 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 PLXNB2O15031 1838 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 PLXNA4Q9HCM2 1894 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 A0A096LNJ9 63 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 ZFP36P26651 326 aaKnown RBP5.48□□□□□ -1.53
SYNE1-228ENST00000490135 FAM19A3Q7Z5A8 133 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 ARHGAP21Q5T5U3 1957 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 DEFB131BA0A096LNP1 70 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 IGHV4-61A0A0C4DH41 118 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 C15orf65H3BRN8 121 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 CRIP3Q6Q6R5 217 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 ZFAND2AQ8N6M9 145 aa5.48□□□□□ -1.53
SYNE1-228ENST00000490135 TRBV10-1A0A0K0K1A3 114 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 TRBV27A0A0K0K1C4 114 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 CCKP06307 115 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 SERTAD4-AS1Q5TG53 156 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 CHCHD10Q8WYQ3 142 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-228ENST00000490135 MYO7BQ6PIF6 2116 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 K7EMT4 169 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 PIP4P1Q86T03 277 aa5.47□□□□□ -1.53
SYNE1-228ENST00000490135 HEATR1Q9H583 2144 aaKnown RBP5.47□□□□□ -1.53
SYNE1-228ENST00000490135 C3orf84H3BNL1 204 aa5.46□□□□□ -1.53
SYNE1-228ENST00000490135 PLA2G1BP04054 148 aaKnown RBP5.46□□□□□ -1.54
SYNE1-228ENST00000490135 KRTAP27-1Q3LI81 207 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 HCFC1P51610 2035 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 LY6LH3BQJ8 138 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 DHRS4-AS1Q9P1J3 65 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 IGHV7-81A0A0B4J1V7 117 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 IGLV9-49A0A0B4J1Y8 123 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 PLA2G2AP14555 144 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 Q8N7P7 452 aa5.46□□□□□ -1.54
SYNE1-228ENST00000490135 LRRK1Q38SD2 2015 aa5.45□□□□□ -1.54
SYNE1-228ENST00000490135 ZFAND3Q9H8U3 227 aa5.45□□□□□ -1.54
SYNE1-228ENST00000490135 SYCNQ0VAF6 134 aa5.45□□□□□ -1.54
SYNE1-228ENST00000490135 IGLV1-44P01699 117 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 FHL2Q14192 279 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 C17orf82Q86X59 251 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-228ENST00000490135 C20orf203Q8NBC4 194 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 WFDC10AQ9H1F0 79 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 FSHBP01225 129 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 Q5XG85 94 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 LTBP1Q14766 1721 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 IGLV11-55A0A075B6I3 123 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 LY6G6CO95867 125 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 SLPIP03973 132 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 ESRGQ1W209 222 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 C5orf56Q8N8D9 126 aa5.44□□□□□ -1.54
SYNE1-228ENST00000490135 ABCA1O95477 2261 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 I3L2K1 104 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 CTSZQ9UBR2 303 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 CACNA1GO43497 2377 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 THSD7BQ9C0I4 1608 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 CRIP1P50238 77 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 POM121L12Q8N7R1 296 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 M0R2N4 97 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 TNFRSF13BO14836 293 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-228ENST00000490135 MAP6D1Q9H9H5 199 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 LINC00474Q9P2X8 69 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 CACNA1DQ01668 2161 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 ZDBF2Q9HCK1 2354 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 DOCK10Q96BY6 2186 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 TRAV10A0A0B4J240 114 aa5.43□□□□□ -1.54
SYNE1-228ENST00000490135 PCDH15Q96QU1 1955 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms