RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 NTN5Q8WTR8 489 aaPredicted RBP9.93□□□□□ -0.82
TRIM54-204ENST00000488321 KRTAP10-1P60331 282 aa9.92□□□□□ -0.82
TRIM54-204ENST00000488321 RIGQ13278 110 aa9.92□□□□□ -0.82
TRIM54-204ENST00000488321 LINC00269Q8N2A0 174 aa9.92□□□□□ -0.82
TRIM54-204ENST00000488321 TMEM191AQ9H0A3 160 aa9.92□□□□□ -0.82
TRIM54-204ENST00000488321 NAT8BQ9UHF3 227 aa9.92□□□□□ -0.82
TRIM54-204ENST00000488321 APOBP04114 4563 aaKnown RBP9.92□□□□□ -0.82
TRIM54-204ENST00000488321 HSPG2P98160 4391 aa9.91□□□□□ -0.82
TRIM54-204ENST00000488321 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.91□□□□□ -0.82
TRIM54-204ENST00000488321 SDHAF1A6NFY7 115 aa9.9□□□□□ -0.82
TRIM54-204ENST00000488321 MIAQ16674 131 aa9.9□□□□□ -0.82
TRIM54-204ENST00000488321 AMN1Q8IY45 258 aa9.9□□□□□ -0.82
TRIM54-204ENST00000488321 HLA-DQA1P01909 254 aa9.89□□□□□ -0.83
TRIM54-204ENST00000488321 PMCHP20382 165 aa9.89□□□□□ -0.83
TRIM54-204ENST00000488321 SMIM27A0A1W2PRY6 76 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 GAS8-AS1O95177 125 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 APCSP02743 223 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 RAB4AP20338 218 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 CAMPP49913 170 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 REG3AQ06141 175 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 MRAP2Q96G30 205 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 RNF185Q96GF1 192 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 ST20Q9HBF5 79 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 PRR34Q9NV39 138 aa9.88□□□□□ -0.83
TRIM54-204ENST00000488321 IGLV4-60A0A075B6I1 120 aa9.87□□□□□ -0.83
TRIM54-204ENST00000488321 TRBV6-5A0A0K0K1A5 114 aa9.87□□□□□ -0.83
TRIM54-204ENST00000488321 I3L3M4 83 aa9.87□□□□□ -0.83
TRIM54-204ENST00000488321 NCR2O95944 276 aa9.87□□□□□ -0.83
TRIM54-204ENST00000488321 C20orf203Q8NBC4 194 aa9.87□□□□□ -0.83
TRIM54-204ENST00000488321 IGLV10-54A0A075B6I4 117 aa9.86□□□□□ -0.83
TRIM54-204ENST00000488321 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.86□□□□□ -0.83
TRIM54-204ENST00000488321 A0A1B0GUV1 79 aa9.86□□□□□ -0.83
TRIM54-204ENST00000488321 IGKV2-29A2NJV5 120 aaPredicted RBP9.86□□□□□ -0.83
TRIM54-204ENST00000488321 SMKR1H3BMG3 65 aa9.86□□□□□ -0.83
TRIM54-204ENST00000488321 RPS10P46783 165 aaKnown RBP9.86□□□□□ -0.83
TRIM54-204ENST00000488321 AMMECR1LQ6DCA0 310 aa9.86□□□□□ -0.83
TRIM54-204ENST00000488321 CLLU1Q5K131 121 aa9.85□□□□□ -0.83
TRIM54-204ENST00000488321 MRPL54Q6P161 138 aaKnown RBP9.85□□□□□ -0.83
TRIM54-204ENST00000488321 RNASEKQ6P5S7 137 aaKnown RBP9.85□□□□□ -0.83
TRIM54-204ENST00000488321 TMEM70Q9BUB7 260 aa9.85□□□□□ -0.83
TRIM54-204ENST00000488321 PCLOQ9Y6V0 5065 aa9.85□□□□□ -0.83
TRIM54-204ENST00000488321 XGP55808 180 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 C14orf177Q52M58 125 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 Q8N1X5 172 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 KRTAP17-1Q9BYP8 105 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 KRTAP4-5Q9BYR2 181 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 TMEM242Q9NWH2 141 aa9.84□□□□□ -0.83
TRIM54-204ENST00000488321 IGKV3OR2-268A0A0C4DH90 116 aa9.83□□□□□ -0.84
TRIM54-204ENST00000488321 A0A1B0GW15 77 aa9.83□□□□□ -0.84
TRIM54-204ENST00000488321 USP17L23D6RBM5 183 aa9.83□□□□□ -0.84
TRIM54-204ENST00000488321 HAMPP81172 84 aa9.83□□□□□ -0.84
TRIM54-204ENST00000488321 FAM104BQ5XKR9 115 aa9.83□□□□□ -0.84
TRIM54-204ENST00000488321 TRAV8-4A0A0B4J246 113 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 PPP1R2P9O14990 202 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 PPP1R17O96001 155 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 TSHBP01222 138 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 S100A8P05109 93 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 FGF6P10767 208 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 HBBP68871 147 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 PNRC1Q12796 327 aaPredicted RBP9.82□□□□□ -0.84
TRIM54-204ENST00000488321 LINC01620Q4KN68 170 aa9.82□□□□□ -0.84
TRIM54-204ENST00000488321 MRPL51Q4U2R6 128 aaKnown RBP9.82□□□□□ -0.84
TRIM54-204ENST00000488321 ABCA13Q86UQ4 5058 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 TRBV27A0A0K0K1C4 114 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 H7C423 109 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 FCER1GP30273 86 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 CKS2P33552 79 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 POLR2KP53803 58 aaKnown RBP9.81□□□□□ -0.84
TRIM54-204ENST00000488321 BTF3L4Q96K17 158 aa9.81□□□□□ -0.84
TRIM54-204ENST00000488321 F8W036 122 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 VCYO14598 125 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 MT-ND4LP03901 98 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 SUMO2P61956 95 aaKnown RBP9.8□□□□□ -0.84
TRIM54-204ENST00000488321 IFITM2Q01629 132 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 KRTAP26-1Q6PEX3 210 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 NRACQ8N912 160 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 TMEM101Q96IK0 257 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 FAM30AQ9NZY2 134 aa9.8□□□□□ -0.84
TRIM54-204ENST00000488321 A0A1B0GXF2 115 aa9.79□□□□□ -0.84
TRIM54-204ENST00000488321 LINC00862A6NCI5 91 aa9.79□□□□□ -0.84
TRIM54-204ENST00000488321 ESDP10768 282 aa9.79□□□□□ -0.84
TRIM54-204ENST00000488321 C7orf77A4D0Y5 90 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 EPM2AB3EWF7 344 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 SMR3BP02814 79 aaPredicted RBP9.78□□□□□ -0.84
TRIM54-204ENST00000488321 PRSS1P07477 247 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 ZNF25P17030 456 aaPredicted RBP9.78□□□□□ -0.84
TRIM54-204ENST00000488321 OR5A1Q8NGJ0 315 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 ANAPC16Q96DE5 110 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 KIR2DL4Q99706 377 aa9.78□□□□□ -0.84
TRIM54-204ENST00000488321 GAGE12HA6NDE8 117 aa9.77□□□□□ -0.85
TRIM54-204ENST00000488321 D6R8Y8 96 aa9.77□□□□□ -0.85
TRIM54-204ENST00000488321 ATP5L2Q7Z4Y8 100 aa9.77□□□□□ -0.85
TRIM54-204ENST00000488321 TNFRSF6BO95407 300 aa9.76□□□□□ -0.85
TRIM54-204ENST00000488321 DGAT2L7PQ6IED9 249 aa9.76□□□□□ -0.85
TRIM54-204ENST00000488321 UQCC3Q6UW78 93 aa9.76□□□□□ -0.85
TRIM54-204ENST00000488321 C20orf78Q9BR46 151 aa9.76□□□□□ -0.85
TRIM54-204ENST00000488321 hDV102S1A0JD36 115 aa9.75□□□□□ -0.85
TRIM54-204ENST00000488321 CLRN3Q8NCR9 226 aa9.75□□□□□ -0.85
TRIM54-204ENST00000488321 CHCHD10Q8WYQ3 142 aaPredicted RBP9.75□□□□□ -0.85
TRIM54-204ENST00000488321 TRBV24-1A0A075B6N3 115 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms