RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SDIM1Q6ZPB5 146 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 RHPN1-AS1Q9BWJ2 59 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 SMG1Q96Q15 3661 aaKnown RBP4.64□□□□□ -1.67
VPS13D-209ENST00000487188 TRAV12-2A0A075B6T6 113 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 LINC01600Q96MT4 127 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 KIF25-AS1Q9Y6Z4 181 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 LINC00315P59091 139 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 VSIG2Q96IQ7 327 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 SPENQ96T58 3664 aaKnown RBP4.63□□□□□ -1.67
VPS13D-209ENST00000487188 TRAV25A0A0B4J276 109 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 FAM223BA6NKX1 122 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 F5H768 121 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 M0QY20 66 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 NXPH4O95158 308 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 TIRAPP58753 221 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 UNQ9165/PRO28630Q6UXU0 137 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 FAM223AQ8IWN6 122 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 SMCR5Q8TEV8 140 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 DSCR8Q96T75 97 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 Q9H8V8 135 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 NDUFA4O00483 81 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 CRPP02741 224 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 HOXD3P31249 432 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-209ENST00000487188 RPL18AQ02543 176 aaKnown RBP4.63□□□□□ -1.67
VPS13D-209ENST00000487188 PRIMA1Q86XR5 153 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 Q8N6K4 173 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 CREBBPQ92793 2442 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 CRYGAP11844 174 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 U3KQE9 123 aa4.63□□□□□ -1.67
VPS13D-209ENST00000487188 MUC4Q99102 2169 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.62□□□□□ -1.67
VPS13D-209ENST00000487188 IGHV1OR15-1A0A075B7D0 117 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 IGKV2-29A2NJV5 120 aaPredicted RBP4.62□□□□□ -1.67
VPS13D-209ENST00000487188 HRCT1Q6UXD1 115 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 LITAFQ99732 161 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 Q9HAA7 133 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 USP24Q9UPU5 2620 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 SAA4P35542 130 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 ANKHD1Q8IWZ3 2542 aaKnown RBP4.62□□□□□ -1.67
VPS13D-209ENST00000487188 IGHV3OR16-10A0A075B7F0 116 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 TINCRA0A1B0GVN0 87 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 KNCNA6PVL3 124 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 SNRPD3P62318 126 aaKnown RBP4.62□□□□□ -1.67
VPS13D-209ENST00000487188 MRPS36P82909 103 aaKnown RBP4.62□□□□□ -1.67
VPS13D-209ENST00000487188 SPINK13Q1W4C9 94 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 SERP2Q8N6R1 65 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 RNF152Q8N8N0 203 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 LINC00308Q8TCZ7 52 aa4.62□□□□□ -1.67
VPS13D-209ENST00000487188 TIMM17BO60830 172 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 TRBV12-3P01733 135 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 RPS28P62857 69 aaKnown RBP4.61□□□□□ -1.67
VPS13D-209ENST00000487188 DCANP1Q8TF63 244 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 OVOL2Q9BRP0 275 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 ITPR1Q14643 2758 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 PTPRQQ9UMZ3 2332 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 IGHV3-16A0A0C4DH30 117 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 MALP21145 153 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 KIR2DL5BQ8NHK3 375 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 MOB4Q9Y3A3 225 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 DOPEY2Q9Y3R5 2298 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 IGHV3-38A0A0C4DH36 116 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 LY6EQ16553 131 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 C19orf54Q5BKX5 351 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 C14orf132Q9NPU4 83 aa4.61□□□□□ -1.67
VPS13D-209ENST00000487188 CDKN2A-AS1Q9UH64 79 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 KLLNB2CW77 178 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 NDUFA1O15239 70 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 IGFL3Q6UXB1 125 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 PYGO1Q9Y3Y4 419 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 USP17L23D6RBM5 183 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 SOCS3O14543 225 aa4.6□□□□□ -1.67
VPS13D-209ENST00000487188 A0A087WVE0 104 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 C5orf38Q86SI9 138 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 DPH3Q96FX2 82 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 C10orf105Q8TEF2 133 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 C9orf85Q96MD7 179 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 CEP295Q9C0D2 2601 aa4.59□□□□□ -1.67
VPS13D-209ENST00000487188 TRAV13-2A0A0B4J235 113 aa4.59□□□□□ -1.68
VPS13D-209ENST00000487188 CITED2Q99967 270 aaPredicted RBP4.59□□□□□ -1.68
VPS13D-209ENST00000487188 TMEM243Q9BU79 118 aa4.59□□□□□ -1.68
VPS13D-209ENST00000487188 TOMM7Q9P0U1 55 aa4.59□□□□□ -1.68
VPS13D-209ENST00000487188 ATMQ13315 3056 aa4.59□□□□□ -1.68
VPS13D-209ENST00000487188 FAM208BQ5VWN6 2430 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1BA6NDE4 496 aaKnown RBP4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1EA6NEQ0 496 aaKnown RBP4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1DP0C7P1 496 aaKnown RBP4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1A1P0DJD3 496 aaKnown RBP4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1CP0DJD4 496 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 RBMY1FQ15415 496 aaKnown RBP4.58□□□□□ -1.68
VPS13D-209ENST00000487188 C4orf26Q17RF5 130 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 FAM222AQ5U5X8 452 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 C5orf56Q8N8D9 126 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 USMG5Q96IX5 58 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 SORL1Q92673 2214 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 S100A7L2Q5SY68 101 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 Q6JHZ5 121 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 MYO18BQ8IUG5 2567 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 APRG1Q8IVJ8 170 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 C1orf43Q9BWL3 253 aa4.58□□□□□ -1.68
VPS13D-209ENST00000487188 GHRHP01286 108 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms