RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 H0Y9J4 135 aa12.39□□□□□ -0.43
COL7A1-210ENST00000487017 NACAE9PAV3 2078 aa12.39□□□□□ -0.43
COL7A1-210ENST00000487017 ZFAND3Q9H8U3 227 aa12.39□□□□□ -0.43
COL7A1-210ENST00000487017 TMEM256-PLSCR3K7ERE1 68 aa12.39□□□□□ -0.43
COL7A1-210ENST00000487017 RNF185Q96GF1 192 aa12.39□□□□□ -0.43
COL7A1-210ENST00000487017 EBI3Q14213 229 aa12.38□□□□□ -0.43
COL7A1-210ENST00000487017 SMAD5-AS1Q9Y6J3 95 aa12.38□□□□□ -0.43
COL7A1-210ENST00000487017 MED12LQ86YW9 2145 aa12.38□□□□□ -0.43
COL7A1-210ENST00000487017 DIRC1Q969H9 104 aa12.38□□□□□ -0.43
COL7A1-210ENST00000487017 IGLV2-11P01706 119 aa12.38□□□□□ -0.43
COL7A1-210ENST00000487017 HIGD2BQ4VC39 106 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 K7EQG2 157 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 SPANXB1Q9NS25 103 aaPredicted RBP12.37□□□□□ -0.43
COL7A1-210ENST00000487017 IGKV2D-26A0A0A0MRZ7 120 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 TMEM223A0PJW6 202 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 LINC00643Q86TS7 51 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 PRO0255Q9UI72 69 aa12.37□□□□□ -0.43
COL7A1-210ENST00000487017 MAPKAPK5-AS1Q8N8E1 139 aa12.36□□□□□ -0.43
COL7A1-210ENST00000487017 HIST2H2BDQ6DRA6 164 aa12.36□□□□□ -0.43
COL7A1-210ENST00000487017 SVIPQ8NHG7 77 aa12.36□□□□□ -0.43
COL7A1-210ENST00000487017 ZNF22P17026 224 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-210ENST00000487017 IGKV2-24A0A0C4DH68 120 aa12.35□□□□□ -0.43
COL7A1-210ENST00000487017 BRK1Q8WUW1 75 aa12.35□□□□□ -0.43
COL7A1-210ENST00000487017 LINC00467Q9BRT7 94 aa12.35□□□□□ -0.43
COL7A1-210ENST00000487017 ZFAND2AQ8N6M9 145 aa12.34□□□□□ -0.43
COL7A1-210ENST00000487017 MUC22E2RYF6 1773 aaPredicted RBP12.34□□□□□ -0.43
COL7A1-210ENST00000487017 IGLV4-3A0A075B6K6 122 aa12.34□□□□□ -0.43
COL7A1-210ENST00000487017 Q6ZTI0 123 aa12.34□□□□□ -0.43
COL7A1-210ENST00000487017 TECTAO75443 2155 aa12.34□□□□□ -0.43
COL7A1-210ENST00000487017 ZFHX2Q9C0A1 2572 aaPredicted RBP12.33□□□□□ -0.44
COL7A1-210ENST00000487017 MT-ATP8P03928 68 aa12.32□□□□□ -0.44
COL7A1-210ENST00000487017 CDKN2A-AS1Q9UH64 79 aa12.32□□□□□ -0.44
COL7A1-210ENST00000487017 TEX49A0A1B0GTD5 131 aa12.32□□□□□ -0.44
COL7A1-210ENST00000487017 DNAJC9-AS1A6NH13 148 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 M0QY20 66 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 PDE6GP18545 87 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 A0A096LNI7 61 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 FAM110AQ9BQ89 295 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 IGKV4-1P06312 121 aa12.31□□□□□ -0.44
COL7A1-210ENST00000487017 C19orf84I3L1E1 186 aa12.3□□□□□ -0.44
COL7A1-210ENST00000487017 INSL3P51460 131 aa12.3□□□□□ -0.44
COL7A1-210ENST00000487017 NDUFV3P56181 108 aaKnown RBP12.3□□□□□ -0.44
COL7A1-210ENST00000487017 Q6YL49 198 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 KLK5Q9Y337 293 aaPredicted RBP12.29□□□□□ -0.44
COL7A1-210ENST00000487017 COX7BP24311 80 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 H7C423 109 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 SEC61GP60059 68 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 C2orf91Q6ZV80 131 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 HIGD2AQ9BW72 106 aa12.29□□□□□ -0.44
COL7A1-210ENST00000487017 RBX1P62877 108 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 DEFB114Q30KQ6 69 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 LRCOL1A6NCL2 159 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 KIAA1549Q9HCM3 1950 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 NRACQ8N912 160 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 LINC00308Q8TCZ7 52 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 B9D2Q9BPU9 175 aa12.28□□□□□ -0.44
COL7A1-210ENST00000487017 CFAP126Q5VTH2 177 aa12.27□□□□□ -0.44
COL7A1-210ENST00000487017 TRBV30A0A0K0K1B3 111 aa12.27□□□□□ -0.45
COL7A1-210ENST00000487017 TRAV23DV6A0A075B6W5 121 aa12.27□□□□□ -0.45
COL7A1-210ENST00000487017 TRIAP1O43715 76 aa12.27□□□□□ -0.45
COL7A1-210ENST00000487017 C11orf71Q6IPW1 123 aa12.27□□□□□ -0.45
COL7A1-210ENST00000487017 TRBV27A0A0K0K1C4 114 aa12.27□□□□□ -0.45
COL7A1-210ENST00000487017 LINC00269Q8N2A0 174 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 UFSP1Q6NVU6 142 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 TRBV6-5A0A0K0K1A5 114 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 TNCP24821 2201 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 REG3AQ06141 175 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 Q8N6K4 173 aa12.26□□□□□ -0.45
COL7A1-210ENST00000487017 ANKHD1Q8IWZ3 2542 aaKnown RBP12.25□□□□□ -0.45
COL7A1-210ENST00000487017 PYGO1Q9Y3Y4 419 aa12.24□□□□□ -0.45
COL7A1-210ENST00000487017 UPK3BQ9BT76 320 aa12.24□□□□□ -0.45
COL7A1-210ENST00000487017 SPTSSBQ8NFR3 76 aa12.24□□□□□ -0.45
COL7A1-210ENST00000487017 IGHV4-31P0DP07 118 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 FAM208BQ5VWN6 2430 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 LRRC75A-AS1Q8N1F1 130 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 C11orf21Q9P2W6 132 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 IBA57-AS1B1ANH7 110 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 RNASE3P12724 160 aaKnown RBP12.23□□□□□ -0.45
COL7A1-210ENST00000487017 C11orf45Q8TAV5 145 aa12.23□□□□□ -0.45
COL7A1-210ENST00000487017 BPY2O14599 106 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 SCXQ7RTU7 201 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 CHCHD10Q8WYQ3 142 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-210ENST00000487017 C10orf142B7Z368 130 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 PROK1P58294 105 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 PRR9Q5T870 116 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 PRORYQ9H606 182 aa12.22□□□□□ -0.45
COL7A1-210ENST00000487017 PIK3CD-AS1Q5SR53 167 aa12.21□□□□□ -0.45
COL7A1-210ENST00000487017 SMIM9A6NGZ8 99 aa12.21□□□□□ -0.45
COL7A1-210ENST00000487017 SDIM1Q6ZPB5 146 aa12.21□□□□□ -0.45
COL7A1-210ENST00000487017 LYRM9A8MSI8 78 aa12.21□□□□□ -0.45
COL7A1-210ENST00000487017 TSHBP01222 138 aa12.21□□□□□ -0.45
COL7A1-210ENST00000487017 LINC00310P59036 64 aa12.21□□□□□ -0.46
COL7A1-210ENST00000487017 FAM222AQ5U5X8 452 aa12.21□□□□□ -0.46
COL7A1-210ENST00000487017 DSCAML1Q8TD84 2053 aa12.21□□□□□ -0.46
COL7A1-210ENST00000487017 UQCRQO14949 82 aa12.2□□□□□ -0.46
COL7A1-210ENST00000487017 CASC2Q6XLA1 102 aa12.2□□□□□ -0.46
COL7A1-210ENST00000487017 ATG2AQ2TAZ0 1938 aa12.2□□□□□ -0.46
COL7A1-210ENST00000487017 MPLKIPQ8TAP9 179 aa12.2□□□□□ -0.46
COL7A1-210ENST00000487017 SLPIP03973 132 aa12.19□□□□□ -0.46
COL7A1-210ENST00000487017 C10orf99Q6UWK7 81 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 180.2 ms