RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 GAGE2EQ4V326 116 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 UBE2WQ96B02 151 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 DUX5Q96PT3 197 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 SPANXA1Q9NS26 97 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 GAGE2DQ9UEU5 116 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 UBE2D4Q9Y2X8 147 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 DOPEY2Q9Y3R5 2298 aa8.9□□□□□ -0.98
COL3A1-206ENST00000487010 TRAV4A0A0B4J268 109 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 KNCNA6PVL3 124 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 A8MZ25 164 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 B4DSR2 109 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 H7C423 109 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 CRLF1O75462 422 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 DEFB112Q30KQ8 113 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 C2orf82Q6UX34 121 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 Q9UF83 564 aa8.9□□□□□ -0.99
COL3A1-206ENST00000487010 COX6CP09669 75 aa8.89□□□□□ -0.99
COL3A1-206ENST00000487010 Q6ZSN1 163 aa8.89□□□□□ -0.99
COL3A1-206ENST00000487010 PRORYQ9H606 182 aa8.89□□□□□ -0.99
COL3A1-206ENST00000487010 NHLRC4P0CG21 123 aaPredicted RBP8.89□□□□□ -0.99
COL3A1-206ENST00000487010 HOXD3P31249 432 aaPredicted RBP8.89□□□□□ -0.99
COL3A1-206ENST00000487010 NPC2P61916 151 aa8.89□□□□□ -0.99
COL3A1-206ENST00000487010 YAE1D1Q9NRH1 226 aa8.89□□□□□ -0.99
COL3A1-206ENST00000487010 NACAE9PAV3 2078 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.88□□□□□ -0.99
COL3A1-206ENST00000487010 IGKV2-29A2NJV5 120 aaPredicted RBP8.88□□□□□ -0.99
COL3A1-206ENST00000487010 H3BT86 120 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 TIMM17BO60830 172 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 PIK3CD-AS1Q5SR53 167 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 Q6ZSV7 163 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 TMEM61Q8N0U2 210 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 DUX3Q96PT4 197 aa8.88□□□□□ -0.99
COL3A1-206ENST00000487010 A8MTW9 85 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 PRM2P04554 102 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 NDUFV3P56181 108 aaKnown RBP8.87□□□□□ -0.99
COL3A1-206ENST00000487010 GAGE5Q13069 117 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 GAGE6Q13070 117 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 Q6Q795 121 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 DEFB131AP59861 70 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 CLEC2BQ92478 149 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 LINC00467Q9BRT7 94 aa8.87□□□□□ -0.99
COL3A1-206ENST00000487010 SORL1Q92673 2214 aa8.86□□□□□ -0.99
COL3A1-206ENST00000487010 RBMY1BA6NDE4 496 aaKnown RBP8.86□□□□□ -0.99
COL3A1-206ENST00000487010 RBMY1EA6NEQ0 496 aaKnown RBP8.86□□□□□ -0.99
COL3A1-206ENST00000487010 LST1O00453 97 aa8.86□□□□□ -0.99
COL3A1-206ENST00000487010 RBMY1DP0C7P1 496 aaKnown RBP8.86□□□□□ -0.99
COL3A1-206ENST00000487010 IFITM1P13164 125 aa8.86□□□□□ -0.99
COL3A1-206ENST00000487010 ZNF415Q09FC8 603 aa8.86□□□□□ -0.99
COL3A1-206ENST00000487010 C15orf53Q8NAA6 179 aa8.86□□□□□ -0.99
COL3A1-206ENST00000487010 UBE2E2Q96LR5 201 aa8.85□□□□□ -0.99
COL3A1-206ENST00000487010 TTC32Q5I0X7 151 aa8.85□□□□□ -0.99
COL3A1-206ENST00000487010 DNAJC30Q96LL9 226 aa8.85□□□□□ -0.99
COL3A1-206ENST00000487010 CDKN2A-AS1Q9UH64 79 aa8.85□□□□□ -0.99
COL3A1-206ENST00000487010 IGHV3-38A0A0C4DH36 116 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 NDUFA1O15239 70 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 TIRAPP58753 221 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 DEFB121Q5J5C9 76 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 IGLV5-45A0A087WSX0 123 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 IGHV3-53P01767 116 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 TMEM101Q96IK0 257 aa8.84□□□□□ -0.99
COL3A1-206ENST00000487010 MRPL23Q16540 153 aaKnown RBP8.83□□□□□ -1
COL3A1-206ENST00000487010 DAND5Q8N907 189 aa8.83□□□□□ -1
COL3A1-206ENST00000487010 SVIPQ8NHG7 77 aa8.83□□□□□ -1
COL3A1-206ENST00000487010 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.83□□□□□ -1
COL3A1-206ENST00000487010 SLURP1P55000 103 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.82□□□□□ -1
COL3A1-206ENST00000487010 C11orf72Q8NBR9 251 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 CITED2Q99967 270 aaPredicted RBP8.82□□□□□ -1
COL3A1-206ENST00000487010 ZNF702PQ9H963 129 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 SS18L2Q9UHA2 77 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 FAM240AA0A1B0GVK7 77 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 B5MCH6 92 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 CIRBPQ14011 172 aaKnown RBP8.82□□□□□ -1
COL3A1-206ENST00000487010 BEAN1Q3B7T3 259 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 LINC01356Q8N9X3 169 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 LINC01587Q99440 93 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 VPREB3Q9UKI3 123 aa8.82□□□□□ -1
COL3A1-206ENST00000487010 RS1O15537 224 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 DSCR9P59020 149 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 COX6A2Q02221 97 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE12JA6NER3 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE7O76087 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE12FP0CL80 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE12GP0CL81 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE12IP0CL82 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 GAGE4Q13068 117 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 C18orf65Q6ZTR6 163 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 LINC00308Q8TCZ7 52 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 NRGNQ92686 78 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 COL12A1Q99715 3063 aa8.81□□□□□ -1
COL3A1-206ENST00000487010 DEFB136Q30KP8 78 aa8.8□□□□□ -1
COL3A1-206ENST00000487010 DGAT2L7PQ6IED9 249 aa8.8□□□□□ -1
COL3A1-206ENST00000487010 CSPG4Q6UVK1 2322 aa8.8□□□□□ -1
COL3A1-206ENST00000487010 IGHV3OR16-12A0A075B7B8 117 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 IGLV5-39A0A0G2JS06 123 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 CCDC179H3BU77 68 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 J3QLI3 93 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 Q9H8V8 135 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 ITPR1Q14643 2758 aa8.79□□□□□ -1
COL3A1-206ENST00000487010 HERVK_113P63121 156 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms