RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 TNFRSF18Q9Y5U5 241 aa13.09□□□□□ -0.31
PDLIM7-207ENST00000486828 F8P00451 2351 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 K7ERU9 68 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 RNF151Q2KHN1 245 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 ODF3L2Q3SX64 289 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 CFAP126Q5VTH2 177 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 SPXQ9BT56 116 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 PYGO1Q9Y3Y4 419 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 HIVEP2P31629 2446 aa13.08□□□□□ -0.32
PDLIM7-207ENST00000486828 A0A0J9YY99 117 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 SRSF9Q13242 221 aaKnown RBP eCLIP13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 RHODO00212 210 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 CD28P10747 220 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 RRN3P1Q2M238 152 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 BEAN1Q3B7T3 259 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 Q6ZSN1 163 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 C11orf44Q8N8P7 122 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 VCX2Q9H322 139 aa13.07□□□□□ -0.32
PDLIM7-207ENST00000486828 A0A1W2PRX2 142 aa13.06□□□□□ -0.32
PDLIM7-207ENST00000486828 TMEM223A0PJW6 202 aa13.06□□□□□ -0.32
PDLIM7-207ENST00000486828 J3QQQ9 107 aa13.06□□□□□ -0.32
PDLIM7-207ENST00000486828 CCL24O00175 119 aa13.06□□□□□ -0.32
PDLIM7-207ENST00000486828 SMR3AQ99954 134 aa13.06□□□□□ -0.32
PDLIM7-207ENST00000486828 AMELXQ99217 191 aa13.05□□□□□ -0.32
PDLIM7-207ENST00000486828 SPANXB1Q9NS25 103 aaPredicted RBP13.05□□□□□ -0.32
PDLIM7-207ENST00000486828 ZNF22P17026 224 aaPredicted RBP13.05□□□□□ -0.32
PDLIM7-207ENST00000486828 LGALS3P17931 250 aaKnown RBP13.05□□□□□ -0.32
PDLIM7-207ENST00000486828 MRPL16Q9NX20 251 aaKnown RBP13.05□□□□□ -0.32
PDLIM7-207ENST00000486828 NSD1Q96L73 2696 aaPredicted RBP13.04□□□□□ -0.32
PDLIM7-207ENST00000486828 LEPROTO15243 131 aa13.04□□□□□ -0.32
PDLIM7-207ENST00000486828 SAP30O75446 220 aa13.04□□□□□ -0.32
PDLIM7-207ENST00000486828 STHQ8IWL8 128 aa13.04□□□□□ -0.32
PDLIM7-207ENST00000486828 NACAE9PAV3 2078 aa13.04□□□□□ -0.32
PDLIM7-207ENST00000486828 RS1O15537 224 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 IGHV3-53P01767 116 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 UBE2D1P51668 147 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 CRYBA4P53673 196 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 FAM104AQ969W3 186 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 DNAJC30Q96LL9 226 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 YAE1D1Q9NRH1 226 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 XCL2Q9UBD3 114 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 Q9UF83 564 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 A0A0J9YXV3 536 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 SLC25A29Q8N8R3 303 aa13.03□□□□□ -0.32
PDLIM7-207ENST00000486828 CITED2Q99967 270 aaPredicted RBP13.02□□□□□ -0.32
PDLIM7-207ENST00000486828 CHCHD7Q9BUK0 85 aa13.02□□□□□ -0.32
PDLIM7-207ENST00000486828 ANK3Q12955 4377 aaKnown RBP13.02□□□□□ -0.33
PDLIM7-207ENST00000486828 LY6G6DO95868 133 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 C1orf158Q8N1D5 194 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 VPS25Q9BRG1 176 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 TSSC4Q9Y5U2 329 aaPredicted RBP13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 AZU1P20160 251 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 C16orf95Q9H693 158 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 PGPEP1Q9NXJ5 209 aa13.01□□□□□ -0.33
PDLIM7-207ENST00000486828 IGHV3-30P01768 117 aa13□□□□□ -0.33
PDLIM7-207ENST00000486828 IGHV3-30-5P0DP03 117 aa13□□□□□ -0.33
PDLIM7-207ENST00000486828 SPANXA1Q9NS26 97 aa13□□□□□ -0.33
PDLIM7-207ENST00000486828 RNASE1P07998 156 aaKnown RBP13□□□□□ -0.33
PDLIM7-207ENST00000486828 MRPS36P82909 103 aaKnown RBP13□□□□□ -0.33
PDLIM7-207ENST00000486828 CEMP1Q6PRD7 247 aaPredicted RBP13□□□□□ -0.33
PDLIM7-207ENST00000486828 LINC01006Q8NI28 216 aa13□□□□□ -0.33
PDLIM7-207ENST00000486828 IL17DQ8TAD2 202 aa13□□□□□ -0.33
PDLIM7-207ENST00000486828 TEP1Q99973 2627 aaKnown RBP12.99□□□□□ -0.33
PDLIM7-207ENST00000486828 UBE2D4Q9Y2X8 147 aa12.99□□□□□ -0.33
PDLIM7-207ENST00000486828 F8W1H4 67 aa12.98□□□□□ -0.33
PDLIM7-207ENST00000486828 G3V4G9 280 aa12.98□□□□□ -0.33
PDLIM7-207ENST00000486828 IGHV3OR16-12A0A075B7B8 117 aa12.98□□□□□ -0.33
PDLIM7-207ENST00000486828 H3BMG7 143 aa12.98□□□□□ -0.33
PDLIM7-207ENST00000486828 SCGB1A1P11684 91 aa12.98□□□□□ -0.33
PDLIM7-207ENST00000486828 IGHV3-64A0A075B6Q5 118 aa12.97□□□□□ -0.33
PDLIM7-207ENST00000486828 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.96□□□□□ -0.33
PDLIM7-207ENST00000486828 IGKV2-29A2NJV5 120 aaPredicted RBP12.96□□□□□ -0.33
PDLIM7-207ENST00000486828 NDUFA11Q86Y39 141 aa12.96□□□□□ -0.33
PDLIM7-207ENST00000486828 IGHV3-38A0A0C4DH36 116 aa12.96□□□□□ -0.34
PDLIM7-207ENST00000486828 APOMO95445 188 aa12.96□□□□□ -0.34
PDLIM7-207ENST00000486828 TSPAN13O95857 204 aa12.96□□□□□ -0.34
PDLIM7-207ENST00000486828 FN1P02751 2386 aaKnown RBP12.95□□□□□ -0.34
PDLIM7-207ENST00000486828 CMC4P56277 68 aaPredicted RBP12.95□□□□□ -0.34
PDLIM7-207ENST00000486828 RNASE13Q5GAN3 156 aaKnown RBP12.95□□□□□ -0.34
PDLIM7-207ENST00000486828 TRGV1A0A0A0MS02 117 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 TINCRA0A1B0GVN0 87 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 IGHV3-30-3P0DP02 117 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 TIMM21Q9BVV7 248 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 CFC1BP0CG36 223 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 CFC1P0CG37 223 aa12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 TMEM263Q8WUH6 116 aaKnown RBP12.94□□□□□ -0.34
PDLIM7-207ENST00000486828 NIPBLQ6KC79 2804 aaeCLIP12.93□□□□□ -0.342e-9■■■□□ 14.8
PDLIM7-207ENST00000486828 RPL24P83731 157 aaKnown RBP12.93□□□□□ -0.34
PDLIM7-207ENST00000486828 WFDC2Q14508 124 aa12.93□□□□□ -0.34
PDLIM7-207ENST00000486828 Q6ZUT4 128 aa12.93□□□□□ -0.34
PDLIM7-207ENST00000486828 C10orf126Q8N4M7 172 aa12.93□□□□□ -0.34
PDLIM7-207ENST00000486828 GAGE13Q4V321 117 aa12.92□□□□□ -0.34
PDLIM7-207ENST00000486828 NF1P21359 2839 aa12.92□□□□□ -0.34
PDLIM7-207ENST00000486828 IGHV1-58A0A0C4DH39 117 aa12.92□□□□□ -0.34
PDLIM7-207ENST00000486828 TEX48A0A1B0GUV7 120 aa12.92□□□□□ -0.34
PDLIM7-207ENST00000486828 PRO0461Q9UI25 63 aa12.92□□□□□ -0.34
PDLIM7-207ENST00000486828 A0A0J9YXY3 114 aa12.91□□□□□ -0.34
PDLIM7-207ENST00000486828 UBE2D3P61077 147 aa12.91□□□□□ -0.34
PDLIM7-207ENST00000486828 UBE2D2P62837 147 aa12.91□□□□□ -0.34
PDLIM7-207ENST00000486828 CUBNO60494 3623 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms