RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 NXT2Q9NPJ8 142 aaKnown RBP8.4□□□□□ -1.06
SDC1-206ENST00000482879 TCAPO15273 167 aa8.39□□□□□ -1.07
SDC1-206ENST00000482879 LGALS9CQ6DKI2 356 aa8.39□□□□□ -1.07
SDC1-206ENST00000482879 TMEM243Q9BU79 118 aa8.39□□□□□ -1.07
SDC1-206ENST00000482879 LY6G6CO95867 125 aa8.38□□□□□ -1.07
SDC1-206ENST00000482879 FA2HQ7L5A8 372 aa8.38□□□□□ -1.07
SDC1-206ENST00000482879 CHCHD5Q9BSY4 110 aa8.38□□□□□ -1.07
SDC1-206ENST00000482879 UPK3BQ9BT76 320 aa8.38□□□□□ -1.07
SDC1-206ENST00000482879 TMEM262E9PQX1 116 aa8.37□□□□□ -1.07
SDC1-206ENST00000482879 WFDC10BQ8IUB3 73 aa8.37□□□□□ -1.07
SDC1-206ENST00000482879 LINC00476Q8WZB0 136 aa8.37□□□□□ -1.07
SDC1-206ENST00000482879 CHCHD7Q9BUK0 85 aa8.37□□□□□ -1.07
SDC1-206ENST00000482879 C1orf196B1AJZ1 125 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 UBE2L6O14933 153 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 SIVA1O15304 175 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 ESDP10768 282 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 RAB5BP61020 215 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 GAGE6Q13070 117 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 LAGE3Q14657 143 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 NIT1Q86X76 327 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 BAGE3Q86Y29 109 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 Q9H8V8 135 aa8.36□□□□□ -1.07
SDC1-206ENST00000482879 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.35□□□□□ -1.07
SDC1-206ENST00000482879 IGKV2-29A2NJV5 120 aaPredicted RBP8.35□□□□□ -1.07
SDC1-206ENST00000482879 K7EMI3 77 aa8.35□□□□□ -1.07
SDC1-206ENST00000482879 LINC00614P0C842 121 aa8.35□□□□□ -1.07
SDC1-206ENST00000482879 Q0VG73 95 aa8.35□□□□□ -1.07
SDC1-206ENST00000482879 ORMDL2Q53FV1 153 aa8.35□□□□□ -1.07
SDC1-206ENST00000482879 LINC01546A6NGU7 62 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 H7C423 109 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BKO60814 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 IGHV3-30P01768 117 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 IGHV3-33P01772 117 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BJP06899 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 IGHV3-30-3P0DP02 117 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 IGHV3-30-5P0DP03 117 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BOP23527 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BBP33778 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BDP58876 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 PKIAP61925 76 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BCP62807 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST2H2BEQ16778 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.34□□□□□ -1.07
SDC1-206ENST00000482879 RNASEKQ6P5S7 137 aaKnown RBP8.34□□□□□ -1.07
SDC1-206ENST00000482879 C20orf203Q8NBC4 194 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BHQ93079 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 TMEM18Q96B42 140 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 URB1-AS1Q96HZ7 61 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BNQ99877 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 HIST1H2BMQ99879 126 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 AP5S1Q9NUS5 200 aa8.34□□□□□ -1.07
SDC1-206ENST00000482879 A0A087WX48 190 aa8.33□□□□□ -1.08
SDC1-206ENST00000482879 DNAH10OSP0CZ25 163 aa8.33□□□□□ -1.08
SDC1-206ENST00000482879 LINC01556Q5JQF7 62 aa8.33□□□□□ -1.08
SDC1-206ENST00000482879 AMMECR1LQ6DCA0 310 aa8.33□□□□□ -1.08
SDC1-206ENST00000482879 Q8N3U1 123 aa8.33□□□□□ -1.08
SDC1-206ENST00000482879 FGF6P10767 208 aa8.32□□□□□ -1.08
SDC1-206ENST00000482879 BTF3P20290 206 aaKnown RBP8.32□□□□□ -1.08
SDC1-206ENST00000482879 G0S2P27469 103 aa8.32□□□□□ -1.08
SDC1-206ENST00000482879 RBX1P62877 108 aa8.32□□□□□ -1.08
SDC1-206ENST00000482879 RPL39P62891 51 aaKnown RBP8.32□□□□□ -1.08
SDC1-206ENST00000482879 MPV17L2Q567V2 206 aa8.32□□□□□ -1.08
SDC1-206ENST00000482879 CHCHD1Q96BP2 118 aaKnown RBP8.32□□□□□ -1.08
SDC1-206ENST00000482879 VPS13DQ5THJ4 4388 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 TRAV9-2A0A087WT02 112 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 LCE6AA0A183 80 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 SMAGPQ0VAQ4 97 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 C2orf66Q6UXQ4 117 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 Q8N976 141 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 CYSLTR1Q9Y271 337 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 ALMS1Q8TCU4 4167 aa8.31□□□□□ -1.08
SDC1-206ENST00000482879 LYSTQ99698 3801 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 A0A1B0GUV1 79 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 SERF1AO75920 110 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 DGAT2L7PQ6IED9 249 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 MRPL52Q86TS9 123 aaKnown RBP8.3□□□□□ -1.08
SDC1-206ENST00000482879 TMEM101Q96IK0 257 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 UBE2D4Q9Y2X8 147 aa8.3□□□□□ -1.08
SDC1-206ENST00000482879 IGLV4-60A0A075B6I1 120 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 NBDYA0A0U1RRE5 68 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 M0R2N4 97 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 HSBP1O75506 76 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 ANGP03950 147 aaKnown RBP8.29□□□□□ -1.08
SDC1-206ENST00000482879 ZNF25P17030 456 aaPredicted RBP8.29□□□□□ -1.08
SDC1-206ENST00000482879 NDUFA6P56556 154 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 PMCHL1Q16048 86 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 OR5A1Q8NGJ0 315 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 TOMM6Q96B49 74 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 TIMM21Q9BVV7 248 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 KLK12Q9UKR0 248 aa8.29□□□□□ -1.08
SDC1-206ENST00000482879 K7EP13 123 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 NUPR1O60356 82 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 HBDP02042 147 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 LINC00310P59036 64 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 TTC32Q5I0X7 151 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 C10orf126Q8N4M7 172 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 SPANXA1Q9NS26 97 aa8.28□□□□□ -1.08
SDC1-206ENST00000482879 CSDC2Q9Y534 153 aaKnown RBP8.28□□□□□ -1.08
SDC1-206ENST00000482879 DNAH1Q9P2D7 4330 aa8.27□□□□□ -1.09
SDC1-206ENST00000482879 A0A096LNJ9 63 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms