RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 NUDT11Q96G61 164 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 CNFNQ9BYD5 112 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 MED9Q9NWA0 146 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 TRAV26-2A0A0B4J265 109 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 F2Z2F3 143 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 K7EN84 100 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 IFNA1P01562 189 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 P01737 135 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 GNG4P50150 75 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 RPS20P60866 119 aaKnown RBP4.47□□□□□ -1.69
HDAC3-207ENST00000475549 RPL37AP61513 92 aaKnown RBP4.47□□□□□ -1.69
HDAC3-207ENST00000475549 PKIAP61925 76 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 CNBPP62633 177 aaKnown RBP4.47□□□□□ -1.69
HDAC3-207ENST00000475549 CACNG7P62955 275 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 CIRBPQ14011 172 aaKnown RBP4.47□□□□□ -1.69
HDAC3-207ENST00000475549 RASL11AQ6T310 242 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.47□□□□□ -1.69
HDAC3-207ENST00000475549 GATD1Q8NB37 220 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 CLRN3Q8NCR9 226 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 OCC1Q8TAD7 63 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 GTSF1Q8WW33 167 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 SMIM12Q96EX1 92 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 NIT2Q9NQR4 276 aa4.47□□□□□ -1.69
HDAC3-207ENST00000475549 TRAV8-4A0A0B4J246 113 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 hDV102S1A0JD36 115 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 H7C1H1 209 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 PDE6DO43924 150 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 CHTF8P0CG12 524 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 MT1HL1P0DM35 61 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 BCL2P10415 239 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 CTRLP40313 264 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 WDR73Q6P4I2 378 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 PGLYRP4Q96LB8 373 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 TMEM243Q9BU79 118 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 RNASE7Q9H1E1 156 aaKnown RBP4.46□□□□□ -1.7
HDAC3-207ENST00000475549 DPH3P1Q9H4G8 78 aa4.46□□□□□ -1.7
HDAC3-207ENST00000475549 GAS8-AS1O95177 125 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 TWIST1Q15672 202 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 SERTAD4-AS1Q5TG53 156 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 EIF5AL1Q6IS14 154 aaKnown RBP4.45□□□□□ -1.7
HDAC3-207ENST00000475549 Q6ZNX1 250 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 TCTE3Q8IZS6 198 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 C15orf56Q8N910 161 aa4.45□□□□□ -1.7
HDAC3-207ENST00000475549 RPL39LQ96EH5 51 aaKnown RBP4.45□□□□□ -1.7
HDAC3-207ENST00000475549 A0A087WYN8 130 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 XKRY2A2RUG3 117 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 FAM231BA6NCW3 169 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 GAGE12HA6NDE8 117 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 TRGC1P0CF51 173 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 SPACA4Q8TDM5 124 aa4.44□□□□□ -1.7
HDAC3-207ENST00000475549 RPP21Q9H633 154 aaKnown RBP4.44□□□□□ -1.7
HDAC3-207ENST00000475549 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.43□□□□□ -1.7
HDAC3-207ENST00000475549 IGKV3OR2-268A0A0C4DH90 116 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 IGKV2-29A2NJV5 120 aaPredicted RBP4.43□□□□□ -1.7
HDAC3-207ENST00000475549 TEX46H3BTG2 121 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 AMTP48728 403 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 COTL1Q14019 142 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 SLC51BQ86UW2 128 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 PRSS3P2Q8NHM4 247 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 BIN3Q9NQY0 253 aa4.43□□□□□ -1.7
HDAC3-207ENST00000475549 PKHD1L1Q86WI1 4243 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 IGHV3-64A0A075B6Q5 118 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 SDHAF1A6NFY7 115 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 UBE2L6O14933 153 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 COX6A2Q02221 97 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 FOXI1Q12951 378 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 HIGD2BQ4VC39 106 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 LYPD6BQ8NI32 183 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 CHCHD10Q8WYQ3 142 aaPredicted RBP4.42□□□□□ -1.7
HDAC3-207ENST00000475549 DPH3Q96FX2 82 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 PLAC8Q9NZF1 115 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 PLA2G2DQ9UNK4 145 aa4.42□□□□□ -1.7
HDAC3-207ENST00000475549 GVQW2A0A096LPI5 108 aaPredicted RBP4.41□□□□□ -1.7
HDAC3-207ENST00000475549 H3BS24 57 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 FGF6P10767 208 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 ESDP10768 282 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 TAGLN2P37802 199 aaKnown RBP4.41□□□□□ -1.7
HDAC3-207ENST00000475549 RPS10P46783 165 aaKnown RBP4.41□□□□□ -1.7
HDAC3-207ENST00000475549 ODF1Q14990 250 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 ALKAL2Q6UX46 152 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 Q6ZRU5 148 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 FAM231DQ6ZW35 169 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 RNF185Q96GF1 192 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 AP5S1Q9NUS5 200 aa4.41□□□□□ -1.7
HDAC3-207ENST00000475549 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.4□□□□□ -1.71
HDAC3-207ENST00000475549 TRBV6-5A0A0K0K1A5 114 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 TMEM250H0YL14 139 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 H7C423 109 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 I3L3M4 83 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 PHOX2AO14813 284 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 NDUFS6O75380 124 aaKnown RBP4.4□□□□□ -1.71
HDAC3-207ENST00000475549 NCR2O95944 276 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 TSHBP01222 138 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 RNASEKQ6P5S7 137 aaKnown RBP4.4□□□□□ -1.71
HDAC3-207ENST00000475549 LINC00526Q96FQ7 95 aa4.4□□□□□ -1.71
HDAC3-207ENST00000475549 A0A096LNI7 61 aa4.39□□□□□ -1.71
HDAC3-207ENST00000475549 IGKV2-24A0A0C4DH68 120 aa4.39□□□□□ -1.71
HDAC3-207ENST00000475549 LINC00959A0A1B0GUT2 108 aa4.39□□□□□ -1.71
HDAC3-207ENST00000475549 GATCO43716 136 aaKnown RBP4.39□□□□□ -1.71
HDAC3-207ENST00000475549 RAB4AP20338 218 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms