RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 UBE2D3P61077 147 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 UBE2D2P62837 147 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 NEGR1Q7Z3B1 354 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 C12orf57Q99622 126 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 ZMAT4Q9H898 229 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 RETNQ9HD89 108 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 CELA1Q9UNI1 258 aa9.06□□□□□ -0.96
VPS13D-205ENST00000473099 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.05□□□□□ -0.96
VPS13D-205ENST00000473099 SMAGPQ0VAQ4 97 aa9.05□□□□□ -0.96
VPS13D-205ENST00000473099 ERASQ7Z444 233 aa9.05□□□□□ -0.96
VPS13D-205ENST00000473099 GAGE12JA6NER3 117 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 NPSP0C0P6 89 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 S100A12P80511 92 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 GAGE1Q13065 139 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 GAGE4Q13068 117 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 GAGE5Q13069 117 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 GAGE13Q4V321 117 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 LINC00173Q6ZV60 143 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 C20orf203Q8NBC4 194 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 TMEM141Q96I45 108 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 SCGB3A1Q96QR1 104 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 TIMM17AQ99595 171 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 GTSF1LQ9H1H1 148 aa9.04□□□□□ -0.96
VPS13D-205ENST00000473099 PAX4O43316 350 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 LINC00694P0DN24 101 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 LGALS9CQ6DKI2 356 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 Q6ZN92 141 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 MRAPQ8TCY5 172 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 Q9UF83 564 aa9.03□□□□□ -0.96
VPS13D-205ENST00000473099 GYPEP15421 78 aa9.02□□□□□ -0.97
VPS13D-205ENST00000473099 PAPPA-AS1Q5QFB9 102 aa9.02□□□□□ -0.97
VPS13D-205ENST00000473099 LINC01545Q5VT33 79 aa9.02□□□□□ -0.97
VPS13D-205ENST00000473099 SH2D6Q7Z4S9 175 aa9.02□□□□□ -0.97
VPS13D-205ENST00000473099 PHLDA1Q8WV24 401 aaPredicted RBP9.02□□□□□ -0.97
VPS13D-205ENST00000473099 PYGO1Q9Y3Y4 419 aa9.02□□□□□ -0.97
VPS13D-205ENST00000473099 TRAV12-1A0A0B4J245 112 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 A0A0J9YWU9 116 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 F5H768 121 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 H3BNG1 76 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 H7C423 109 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 PRSS1P07477 247 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 C12orf74Q32Q52 190 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 TEX43Q6ZNM6 134 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 Q8N976 141 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 B9D2Q9BPU9 175 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 SPANXA1Q9NS26 97 aa9.01□□□□□ -0.97
VPS13D-205ENST00000473099 TRAV26-1A0A087WT03 109 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 IGHV3-38A0A0C4DH36 116 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 IGIPA6NJ69 53 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 ATP6V0E2Q8NHE4 81 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 C11orf45Q8TAV5 145 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 CHCHD7Q9BUK0 85 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 TIMM21Q9BVV7 248 aa9□□□□□ -0.97
VPS13D-205ENST00000473099 TRBV25-1A0A075B6N4 114 aa8.99□□□□□ -0.97
VPS13D-205ENST00000473099 LOC100131303A0A0U1RQF7 123 aa8.99□□□□□ -0.97
VPS13D-205ENST00000473099 H0Y8G0 127 aa8.99□□□□□ -0.97
VPS13D-205ENST00000473099 RPL39P62891 51 aaKnown RBP8.99□□□□□ -0.97
VPS13D-205ENST00000473099 MRPL23Q16540 153 aaKnown RBP8.99□□□□□ -0.97
VPS13D-205ENST00000473099 A0A087WX48 190 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 HTN3P15516 51 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 BAALCQ8WXS3 180 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 TMEM243Q9BU79 118 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 VAMP8Q9BV40 100 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 ICOSQ9Y6W8 199 aa8.98□□□□□ -0.97
VPS13D-205ENST00000473099 TRBV6-8A0A0A6YYG3 113 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 UBE2L6O14933 153 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 NHLRC4P0CG21 123 aaPredicted RBP8.97□□□□□ -0.97
VPS13D-205ENST00000473099 ODF1Q14990 250 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 PMVKQ15126 192 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 VSIG2Q96IQ7 327 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 CSDC2Q9Y534 153 aaKnown RBP8.97□□□□□ -0.97
VPS13D-205ENST00000473099 TENM3Q9P273 2699 aa8.97□□□□□ -0.97
VPS13D-205ENST00000473099 HSBP1L1C9JCN9 74 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 F8VRH5 84 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 ZNF25P17030 456 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-205ENST00000473099 MRPS36P82909 103 aaKnown RBP8.96□□□□□ -0.98
VPS13D-205ENST00000473099 DGAT2L7PQ6IED9 249 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 NTM-AS1Q6ZSK4 140 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 Q6ZTC4 211 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 MRPL52Q86TS9 123 aaKnown RBP8.96□□□□□ -0.98
VPS13D-205ENST00000473099 DEFB104AQ8WTQ1 72 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 UBE2D4Q9Y2X8 147 aa8.96□□□□□ -0.98
VPS13D-205ENST00000473099 PRKDCP78527 4128 aaKnown RBP8.95□□□□□ -0.98
VPS13D-205ENST00000473099 IGLV4-3A0A075B6K6 122 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 TRAV9-2A0A087WT02 112 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 A0A0J9YY99 117 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 DPM2O94777 84 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 PLNP26678 52 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 CDPF1Q6NVV7 123 aa8.95□□□□□ -0.98
VPS13D-205ENST00000473099 CHTOPQ9Y3Y2 248 aaKnown RBP8.95□□□□□ -0.98
VPS13D-205ENST00000473099 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-205ENST00000473099 TRAV10A0A0B4J240 114 aa8.94□□□□□ -0.98
VPS13D-205ENST00000473099 IGKV2-29A2NJV5 120 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-205ENST00000473099 IGKCP01834 107 aa8.94□□□□□ -0.98
VPS13D-205ENST00000473099 PKIAP61925 76 aa8.94□□□□□ -0.98
VPS13D-205ENST00000473099 TMEM101Q96IK0 257 aa8.94□□□□□ -0.98
VPS13D-205ENST00000473099 VCX2Q9H322 139 aa8.94□□□□□ -0.98
VPS13D-205ENST00000473099 DEFB131BA0A096LNP1 70 aa8.93□□□□□ -0.98
VPS13D-205ENST00000473099 PRSS29PA6NIE9 313 aa8.93□□□□□ -0.98
VPS13D-205ENST00000473099 TSTD3H0UI37 97 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms