RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 TAL2Q16559 108 aa5.48□□□□□ -1.53
COL6A3-208ENST00000468792 NEGR1Q7Z3B1 354 aa5.48□□□□□ -1.53
COL6A3-208ENST00000468792 PCP2Q8IVA1 136 aa5.48□□□□□ -1.53
COL6A3-208ENST00000468792 TIMM21Q9BVV7 248 aa5.48□□□□□ -1.53
COL6A3-208ENST00000468792 SPANXA1Q9NS26 97 aa5.48□□□□□ -1.53
COL6A3-208ENST00000468792 VWFP04275 2813 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 IGLV4-69A0A075B6H9 119 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 IGKV2D-26A0A0A0MRZ7 120 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 PLAC8L1A1L4L8 177 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 HERVK_113P61574 105 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 RPL39P62891 51 aaKnown RBP5.47□□□□□ -1.53
COL6A3-208ENST00000468792 SMAGPQ0VAQ4 97 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 BATFQ16520 125 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 Q6ZSN1 163 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 DAZ4Q86SG3 579 aaKnown RBP5.47□□□□□ -1.53
COL6A3-208ENST00000468792 GTSCR1Q86UQ5 136 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 OR4C5Q8NGB2 326 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 KIR2DL5BQ8NHK3 375 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 AMELXQ99217 191 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 DAZ3Q9NR90 486 aaKnown RBP5.47□□□□□ -1.53
COL6A3-208ENST00000468792 JMJD1CQ15652 2540 aa5.47□□□□□ -1.53
COL6A3-208ENST00000468792 IGLV4-3A0A075B6K6 122 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TRBV7-3A0A075B6L6 115 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TRBV25-1A0A075B6N4 114 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TRGV1A0A0A0MS02 117 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TRBV6-4A0A1B0GX49 114 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 A6NDN8 102 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 PRM2P04554 102 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 MRPS36P82909 103 aaKnown RBP5.46□□□□□ -1.54
COL6A3-208ENST00000468792 RRN3P1Q2M238 152 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 LINC00612Q8N6U2 182 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 LINC00469Q8N7U9 141 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 OR11H2Q8NH07 326 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 CHCHD7Q9BUK0 85 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TM2D2Q9BX73 214 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 VCX2Q9H322 139 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 MRPL16Q9NX20 251 aaKnown RBP5.46□□□□□ -1.54
COL6A3-208ENST00000468792 CSDC2Q9Y534 153 aaKnown RBP5.46□□□□□ -1.54
COL6A3-208ENST00000468792 COX11Q9Y6N1 276 aa5.46□□□□□ -1.54
COL6A3-208ENST00000468792 TENM1Q9UKZ4 2725 aa5.45□□□□□ -1.54
COL6A3-208ENST00000468792 MYMXA0A1B0GTQ4 84 aa5.45□□□□□ -1.54
COL6A3-208ENST00000468792 K7EQD1 137 aa5.45□□□□□ -1.54
COL6A3-208ENST00000468792 RPL36AP83881 106 aaKnown RBP5.45□□□□□ -1.54
COL6A3-208ENST00000468792 COTL1Q14019 142 aa5.45□□□□□ -1.54
COL6A3-208ENST00000468792 RPL36ALQ969Q0 106 aaKnown RBP5.45□□□□□ -1.54
COL6A3-208ENST00000468792 GTSF1LQ9H1H1 148 aa5.45□□□□□ -1.54
COL6A3-208ENST00000468792 TEP1Q99973 2627 aaKnown RBP5.45□□□□□ -1.54
COL6A3-208ENST00000468792 IGHV3-73A0A0B4J1V6 119 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 H3BRM9 83 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 H7C423 109 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 TAX1BP3O14907 124 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 UBE2D3P61077 147 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 UBE2D2P62837 147 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 Q6ZTI0 123 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 FAM19A3Q7Z5A8 133 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 ZNRF2Q8NHG8 242 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 FAM104AQ969W3 186 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 PRADC1Q9BSG0 188 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 CHAC1Q9BUX1 264 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 NOP10Q9NPE3 64 aaKnown RBP5.44□□□□□ -1.54
COL6A3-208ENST00000468792 TP73-AS1Q9UF72 201 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 UBE2D4Q9Y2X8 147 aa5.44□□□□□ -1.54
COL6A3-208ENST00000468792 IGHV3OR16-12A0A075B7B8 117 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 TINCRA0A1B0GVN0 87 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 ZNF25P17030 456 aaPredicted RBP5.43□□□□□ -1.54
COL6A3-208ENST00000468792 RPL35AP18077 110 aaKnown RBP5.43□□□□□ -1.54
COL6A3-208ENST00000468792 SHISA2Q6UWI4 295 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.43□□□□□ -1.54
COL6A3-208ENST00000468792 MAPKAPK5-AS1Q8N8E1 139 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 ZNF479Q96JC4 524 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 WFDC10AQ9H1F0 79 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 FLNBO75369 2602 aaKnown RBP5.43□□□□□ -1.54
COL6A3-208ENST00000468792 ATRQ13535 2644 aa5.43□□□□□ -1.54
COL6A3-208ENST00000468792 TRAV8-6A0A0B4J262 113 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 TMEM223A0PJW6 202 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 LEPROTO15243 131 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 LINC00694P0DN24 101 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 APOC4P55056 127 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 TIRAPP58753 221 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 SBSPONQ8IVN8 264 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 CEND1Q8N111 149 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 SLC25A29Q8N8R3 303 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 PLEKHB2Q96CS7 222 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 Q9UF83 564 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 CMYA5Q8N3K9 4069 aa5.42□□□□□ -1.54
COL6A3-208ENST00000468792 TRGV2A0A075B6R0 118 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 IGLV5-45A0A087WSX0 123 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 A0A1B0GWB2 263 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 C9orf118A6NHY6 69 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 LYRM9A8MSI8 78 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 ZNF22P17026 224 aaPredicted RBP5.41□□□□□ -1.54
COL6A3-208ENST00000468792 UBE2V1Q13404 147 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 FHL2Q14192 279 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 SPANXB1Q9NS25 103 aaPredicted RBP5.41□□□□□ -1.54
COL6A3-208ENST00000468792 X6R8D5 127 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 TRRAPQ9Y4A5 3859 aa5.41□□□□□ -1.54
COL6A3-208ENST00000468792 DNAH3Q8TD57 4116 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 GAGE12BA1L429 117 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 ZNF815PA8K554 130 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 J3QQQ9 107 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms