RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NIPBLQ6KC79 2804 aaeCLIP6.49□□□□□ -1.37
SYNE1-217ENST00000466159 NOTCH3Q9UM47 2321 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3OR16-12A0A075B7B8 117 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 TMEM223A0PJW6 202 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 H3BMG7 143 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 CCL24O00175 119 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 ZNF22P17026 224 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-217ENST00000466159 RNASE13Q5GAN3 156 aaKnown RBP6.49□□□□□ -1.37
SYNE1-217ENST00000466159 PDZD2O15018 2839 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 RHODO00212 210 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 LGALS3P17931 250 aaKnown RBP6.48□□□□□ -1.37
SYNE1-217ENST00000466159 FHL3Q13643 280 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 CITED2Q99967 270 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-217ENST00000466159 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 ANK3Q12955 4377 aaKnown RBP6.48□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3-38A0A0C4DH36 116 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 UBE2D1P51668 147 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 PIK3CD-AS1Q5SR53 167 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 STHQ8IWL8 128 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 SLC25A29Q8N8R3 303 aa6.48□□□□□ -1.37
SYNE1-217ENST00000466159 MTORP42345 2549 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 TMEM238LA0A1B0GVL6 79 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 A6NJY4 79 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 APOMO95445 188 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 PTH2Q96A98 100 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 LINC00467Q9BRT7 94 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 CHCHD7Q9BUK0 85 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 PYGO1Q9Y3Y4 419 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 LEPROTO15243 131 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3-30P01768 117 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3-30-5P0DP03 117 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 KRTAP1-1Q07627 177 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 WFDC2Q14508 124 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 BEAN1Q3B7T3 259 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 SFTA2Q6UW10 78 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 C1orf158Q8N1D5 194 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 MTURNQ8N3F0 131 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 SPXQ9BT56 116 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 ITPR2Q14571 2701 aa6.47□□□□□ -1.37
SYNE1-217ENST00000466159 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-217ENST00000466159 IGKV2-29A2NJV5 120 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3-53P01767 116 aa6.46□□□□□ -1.37
SYNE1-217ENST00000466159 RPL24P83731 157 aaKnown RBP6.46□□□□□ -1.37
SYNE1-217ENST00000466159 TEX29Q8N6K0 151 aa6.46□□□□□ -1.37
SYNE1-217ENST00000466159 SPANXB1Q9NS25 103 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-217ENST00000466159 JMJD1CQ15652 2540 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 TRAV25A0A0B4J276 109 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 RS1O15537 224 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 SVIPQ8NHG7 77 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 LINC01006Q8NI28 216 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 YAE1D1Q9NRH1 226 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 TEX48A0A1B0GUV7 120 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 TSPAN13O95857 204 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 NDUFA11Q86Y39 141 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 CLUHP3Q96NS8 147 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 UBE2D4Q9Y2X8 147 aa6.46□□□□□ -1.38
SYNE1-217ENST00000466159 F8W1H4 67 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 CFC1BP0CG36 223 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 CFC1P0CG37 223 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 SCGB1A1P11684 91 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 MRPS36P82909 103 aaKnown RBP6.45□□□□□ -1.38
SYNE1-217ENST00000466159 SETXQ7Z333 2677 aaKnown RBP6.45□□□□□ -1.38
SYNE1-217ENST00000466159 TRGV1A0A0A0MS02 117 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 TRAV8-3A0A0A6YYJ7 113 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 ADARB2-AS1A8MUL3 147 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 C10orf126Q8N4M7 172 aa6.45□□□□□ -1.38
SYNE1-217ENST00000466159 LOC107984156A0A0G2JMH3 177 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 IGHV3-30-3P0DP02 117 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 PLA2G2AP14555 144 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 Q6ZUT4 128 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 ARL17AQ8IVW1 177 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 DNAJC30Q96LL9 226 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 TSSC4Q9Y5U2 329 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-217ENST00000466159 CRYBA4P53673 196 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 GAGE13Q4V321 117 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 SH2D6Q7Z4S9 175 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 TIMM21Q9BVV7 248 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 WFDC10AQ9H1F0 79 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 PRO0461Q9UI25 63 aa6.44□□□□□ -1.38
SYNE1-217ENST00000466159 A8MZ25 164 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 ETDBQ3ZM63 59 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 Q6ZTI0 123 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 IL17DQ8TAD2 202 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 SPANXA1Q9NS26 97 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 A4D1N5 150 aa6.43□□□□□ -1.38
SYNE1-217ENST00000466159 RNASE1P07998 156 aaKnown RBP6.43□□□□□ -1.38
SYNE1-217ENST00000466159 A0A0J9YXY3 114 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 J3QKU1 62 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 EIF4EBP3O60516 100 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-217ENST00000466159 GIG44P09565 113 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-217ENST00000466159 PSMB2P49721 201 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 MUSTN1Q8IVN3 82 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 C2CD3Q4AC94 2353 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 HELZ2Q9BYK8 2649 aaKnown RBP6.42□□□□□ -1.38
SYNE1-217ENST00000466159 TINCRA0A1B0GVN0 87 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 SPINK8P0C7L1 97 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 UBE2D3P61077 147 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 UBE2D2P62837 147 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 SIGMAR1Q99720 223 aa6.42□□□□□ -1.38
SYNE1-217ENST00000466159 C16orf95Q9H693 158 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms