RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.78□□□□□ -1.16
CUX1-207ENST00000465461 A0A1B0GW15 77 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 IGKV2-29A2NJV5 120 aaPredicted RBP7.78□□□□□ -1.16
CUX1-207ENST00000465461 PSCAO43653 123 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 KRTAP10-2P60368 255 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 ENHOQ6UWT2 76 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 TMEM70Q9BUB7 260 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 TMEM242Q9NWH2 141 aa7.78□□□□□ -1.16
CUX1-207ENST00000465461 IGLV4-60A0A075B6I1 120 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 A0A087WTM6 91 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 C7orf77A4D0Y5 90 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 D6R8Y8 96 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 I3L3M4 83 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 TSHBP01222 138 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 CKS2P33552 79 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 POLR2KP53803 58 aaKnown RBP7.77□□□□□ -1.17
CUX1-207ENST00000465461 LAGE3Q14657 143 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 MAPKAPK5-AS1Q8N8E1 139 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 CHCHD7Q9BUK0 85 aa7.77□□□□□ -1.17
CUX1-207ENST00000465461 CARHSP1Q9Y2V2 147 aaKnown RBP7.77□□□□□ -1.17
CUX1-207ENST00000465461 IGKV2D-24A0A075B6R9 120 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 TRAV8-3A0A0A6YYJ7 113 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 UBE2L6O14933 153 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 APCSP02743 223 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 S100A8P05109 93 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 WFDC2Q14508 124 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 ATP5L2Q7Z4Y8 100 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 LINC00269Q8N2A0 174 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 C20orf203Q8NBC4 194 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 CLRN3Q8NCR9 226 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 CTDSP1Q9GZU7 261 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 BIRC6Q9NR09 4857 aa7.76□□□□□ -1.17
CUX1-207ENST00000465461 LRCOL1A6NCL2 159 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 LECT2O14960 151 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 TNFRSF6BO95407 300 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 NPYP01303 97 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 SUMO2P61956 95 aaKnown RBP7.75□□□□□ -1.17
CUX1-207ENST00000465461 ELOBQ15370 118 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 BAALCQ8WXS3 180 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 BTF3L4Q96K17 158 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 RPS10P5Q9NQ39 176 aa7.75□□□□□ -1.17
CUX1-207ENST00000465461 TRBV27A0A0K0K1C4 114 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 VCYO14598 125 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 APOC3P02656 99 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 CRPP02741 224 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 SLC7A5P1Q8MH63 180 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 IMMP2LQ96T52 175 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 PKD1P98161 4303 aa7.74□□□□□ -1.17
CUX1-207ENST00000465461 IGKV3OR2-268A0A0C4DH90 116 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 C16orf90A8MZG2 172 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 PPP1R17O96001 155 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 PKIAP61925 76 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 REG3AQ06141 175 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 RNASEKQ6P5S7 137 aaKnown RBP7.73□□□□□ -1.17
CUX1-207ENST00000465461 TMEM136Q6ZRR5 245 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 TM2D2Q9BX73 214 aa7.73□□□□□ -1.17
CUX1-207ENST00000465461 IGLV10-54A0A075B6I4 117 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 TRBV24-1A0A075B6N3 115 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 A0A1B0GUV1 79 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 EREGO14944 169 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 FGF6P10767 208 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 ESDP10768 282 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 FCER1GP30273 86 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 Q0VG73 95 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 KIAA1644Q3SXP7 199 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 AMMECR1LQ6DCA0 310 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 ORMDL3Q8N138 153 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 PRELID3AQ96N28 172 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 PRR34Q9NV39 138 aa7.72□□□□□ -1.17
CUX1-207ENST00000465461 LOC389332A0A1B0GUA5 103 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 TCAPO15273 167 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 S100PP25815 95 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 RHEBQ15382 184 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 RMI2Q96E14 147 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 C20orf78Q9BR46 151 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 C1orf43Q9BWL3 253 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 DNAH11Q96DT5 4516 aa7.71□□□□□ -1.18
CUX1-207ENST00000465461 HECTD4Q9Y4D8 3996 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 HLA-DQA1P01909 254 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 PPBPP02775 128 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 MIAQ16674 131 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 KRTAP26-1Q6PEX3 210 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 Q8N814 137 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 KIR2DL4Q99706 377 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 SMIM2Q9BVW6 85 aa7.7□□□□□ -1.18
CUX1-207ENST00000465461 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.69□□□□□ -1.18
CUX1-207ENST00000465461 TGIF2-C20orf24A0A0A6YYL0 155 aa7.69□□□□□ -1.18
CUX1-207ENST00000465461 H7C423 109 aa7.69□□□□□ -1.18
CUX1-207ENST00000465461 COX11Q9Y6N1 276 aa7.69□□□□□ -1.18
CUX1-207ENST00000465461 TRAV9-1A0A075B6T8 112 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 PHOX2AO14813 284 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 SNAPINO95295 136 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 RPL39P62891 51 aaKnown RBP7.68□□□□□ -1.18
CUX1-207ENST00000465461 RPL32P62910 135 aaKnown RBP7.68□□□□□ -1.18
CUX1-207ENST00000465461 NDUFA5Q16718 116 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 RNASE13Q5GAN3 156 aaKnown RBP7.68□□□□□ -1.18
CUX1-207ENST00000465461 SVBPQ8N300 66 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 PGPEP1Q9NXJ5 209 aa7.68□□□□□ -1.18
CUX1-207ENST00000465461 DYNC1H1Q14204 4646 aaKnown RBP7.67□□□□□ -1.18
CUX1-207ENST00000465461 OR5A1Q8NGJ0 315 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms