RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 WDR73Q6P4I2 378 aa14.26□□□□□ -0.13
USP4-208ENST00000464168 MANBALQ9NQG1 85 aa14.26□□□□□ -0.13
USP4-208ENST00000464168 RAB19A4D1S5 217 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 GAGE12HA6NDE8 117 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 HMSDA8MTL9 139 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 BCL2L11O43521 198 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 AMTP48728 403 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 COX6A2Q02221 97 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 COTL1Q14019 142 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 LYZL1Q6UWQ5 148 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 DPH3P1Q9H4G8 78 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 RNF213Q63HN8 5207 aa14.25□□□□□ -0.13
USP4-208ENST00000464168 TRGC1P0CF51 173 aa14.24□□□□□ -0.13
USP4-208ENST00000464168 NTF3P20783 257 aa14.24□□□□□ -0.13
USP4-208ENST00000464168 CFAP161Q6P656 301 aa14.24□□□□□ -0.13
USP4-208ENST00000464168 C7orf33Q8WU49 177 aa14.24□□□□□ -0.13
USP4-208ENST00000464168 KANTRA0A1W2PQU2 76 aa14.23□□□□□ -0.13
USP4-208ENST00000464168 XKRY2A2RUG3 117 aa14.23□□□□□ -0.13
USP4-208ENST00000464168 IFNA1P01562 189 aa14.23□□□□□ -0.13
USP4-208ENST00000464168 RPS10P46783 165 aaKnown RBP14.23□□□□□ -0.13
USP4-208ENST00000464168 RGS21Q2M5E4 152 aa14.23□□□□□ -0.13
USP4-208ENST00000464168 PRSS3P2Q8NHM4 247 aa14.23□□□□□ -0.13
USP4-208ENST00000464168 TRAV1-1A0A0B4J248 108 aa14.22□□□□□ -0.13
USP4-208ENST00000464168 GNG4P50150 75 aa14.22□□□□□ -0.13
USP4-208ENST00000464168 C9orf62Q8N4C0 152 aa14.22□□□□□ -0.13
USP4-208ENST00000464168 SMIM12Q96EX1 92 aa14.22□□□□□ -0.13
USP4-208ENST00000464168 IGKV3OR2-268A0A0C4DH90 116 aa14.21□□□□□ -0.13
USP4-208ENST00000464168 NDUFS6O75380 124 aaKnown RBP14.21□□□□□ -0.13
USP4-208ENST00000464168 HIGD2BQ4VC39 106 aa14.21□□□□□ -0.13
USP4-208ENST00000464168 TRBV20OR9-2A0A075B6H5 130 aa14.2□□□□□ -0.14
USP4-208ENST00000464168 EIF5AP63241 154 aaKnown RBP14.2□□□□□ -0.14
USP4-208ENST00000464168 MAJINQ3KP22 176 aa14.2□□□□□ -0.14
USP4-208ENST00000464168 GTSF1Q8WW33 167 aa14.2□□□□□ -0.14
USP4-208ENST00000464168 LINC01600Q96MT4 127 aa14.2□□□□□ -0.14
USP4-208ENST00000464168 IGKV2-24A0A0C4DH68 120 aa14.19□□□□□ -0.14
USP4-208ENST00000464168 GATD1Q8NB37 220 aa14.19□□□□□ -0.14
USP4-208ENST00000464168 CHCHD10Q8WYQ3 142 aaPredicted RBP14.19□□□□□ -0.14
USP4-208ENST00000464168 CTRLP40313 264 aa14.18□□□□□ -0.14
USP4-208ENST00000464168 PRR3P79522 188 aaKnown RBP14.18□□□□□ -0.14
USP4-208ENST00000464168 TRAV26-2A0A0B4J265 109 aa14.17□□□□□ -0.14
USP4-208ENST00000464168 TWIST1Q15672 202 aa14.17□□□□□ -0.14
USP4-208ENST00000464168 STPG4Q8N801 248 aa14.17□□□□□ -0.14
USP4-208ENST00000464168 CNFNQ9BYD5 112 aa14.17□□□□□ -0.14
USP4-208ENST00000464168 GVQW2A0A096LPI5 108 aaPredicted RBP14.16□□□□□ -0.14
USP4-208ENST00000464168 MEF2BQ02080 365 aaPredicted RBP14.16□□□□□ -0.14
USP4-208ENST00000464168 ODF1Q14990 250 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 Q6ZNX1 250 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 NUDT10Q8NFP7 164 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 NUDT11Q96G61 164 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 BIN3Q9NQY0 253 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 MED9Q9NWA0 146 aa14.16□□□□□ -0.14
USP4-208ENST00000464168 PDE6DO43924 150 aa14.15□□□□□ -0.14
USP4-208ENST00000464168 AMMECR1LQ6DCA0 310 aa14.15□□□□□ -0.14
USP4-208ENST00000464168 LYPD6BQ8NI32 183 aa14.15□□□□□ -0.14
USP4-208ENST00000464168 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.13□□□□□ -0.15
USP4-208ENST00000464168 A0A096LNI7 61 aa14.13□□□□□ -0.15
USP4-208ENST00000464168 IGKV2-29A2NJV5 120 aaPredicted RBP14.13□□□□□ -0.15
USP4-208ENST00000464168 NCR2O95944 276 aa14.13□□□□□ -0.15
USP4-208ENST00000464168 FOXI1Q12951 378 aa14.13□□□□□ -0.15
USP4-208ENST00000464168 RNASEKQ6P5S7 137 aaKnown RBP14.13□□□□□ -0.15
USP4-208ENST00000464168 RPL39LQ96EH5 51 aaKnown RBP14.13□□□□□ -0.15
USP4-208ENST00000464168 TEX46H3BTG2 121 aa14.12□□□□□ -0.15
USP4-208ENST00000464168 H7C423 109 aa14.12□□□□□ -0.15
USP4-208ENST00000464168 FGF6P10767 208 aa14.11□□□□□ -0.15
USP4-208ENST00000464168 FOXA3P55318 350 aaPredicted RBP14.11□□□□□ -0.15
USP4-208ENST00000464168 A0A0J9YXV3 536 aa14.1□□□□□ -0.15
USP4-208ENST00000464168 KRTAP10-8P60410 259 aa14.1□□□□□ -0.15
USP4-208ENST00000464168 RNASE7Q9H1E1 156 aaKnown RBP14.1□□□□□ -0.15
USP4-208ENST00000464168 RPP21Q9H633 154 aaKnown RBP14.1□□□□□ -0.15
USP4-208ENST00000464168 APCSP02743 223 aa14.09□□□□□ -0.15
USP4-208ENST00000464168 K7EN84 100 aa14.08□□□□□ -0.16
USP4-208ENST00000464168 BCL2P10415 239 aa14.08□□□□□ -0.16
USP4-208ENST00000464168 OR5A1Q8NGJ0 315 aa14.08□□□□□ -0.16
USP4-208ENST00000464168 LINC00474Q9P2X8 69 aa14.08□□□□□ -0.16
USP4-208ENST00000464168 FAM231BA6NCW3 169 aa14.07□□□□□ -0.16
USP4-208ENST00000464168 SDHAF1A6NFY7 115 aa14.07□□□□□ -0.16
USP4-208ENST00000464168 XCL1P47992 114 aa14.07□□□□□ -0.16
USP4-208ENST00000464168 EIF5AL1Q6IS14 154 aaKnown RBP14.07□□□□□ -0.16
USP4-208ENST00000464168 SPINK6Q6UWN8 80 aa14.07□□□□□ -0.16
USP4-208ENST00000464168 LINC00526Q96FQ7 95 aa14.07□□□□□ -0.16
USP4-208ENST00000464168 ZNF25P17030 456 aaPredicted RBP14.06□□□□□ -0.16
USP4-208ENST00000464168 TEX261Q6UWH6 196 aa14.06□□□□□ -0.16
USP4-208ENST00000464168 OCC1Q8TAD7 63 aa14.06□□□□□ -0.16
USP4-208ENST00000464168 LINC00959A0A1B0GUT2 108 aa14.05□□□□□ -0.16
USP4-208ENST00000464168 SRSF9Q13242 221 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP4-208ENST00000464168 IGHV1-58A0A0C4DH39 117 aa14.04□□□□□ -0.16
USP4-208ENST00000464168 CCL25O15444 150 aa14.04□□□□□ -0.16
USP4-208ENST00000464168 REG3GQ6UW15 175 aa14.04□□□□□ -0.16
USP4-208ENST00000464168 SMIM15Q7Z3B0 74 aa14.04□□□□□ -0.16
USP4-208ENST00000464168 I3L3M4 83 aa14.03□□□□□ -0.16
USP4-208ENST00000464168 PMCHP20382 165 aa14.03□□□□□ -0.16
USP4-208ENST00000464168 BTF3L4Q96K17 158 aa14.03□□□□□ -0.16
USP4-208ENST00000464168 CARD19Q96LW7 228 aa14.03□□□□□ -0.16
USP4-208ENST00000464168 TRBV6-5A0A0K0K1A5 114 aa14.02□□□□□ -0.17
USP4-208ENST00000464168 ESDP10768 282 aa14.02□□□□□ -0.17
USP4-208ENST00000464168 TMEM101Q96IK0 257 aa14.02□□□□□ -0.17
USP4-208ENST00000464168 PKIGQ9Y2B9 76 aa14.02□□□□□ -0.17
USP4-208ENST00000464168 GAS8-AS1O95177 125 aa14.01□□□□□ -0.17
USP4-208ENST00000464168 Q6ZRP5 223 aa14.01□□□□□ -0.17
USP4-208ENST00000464168 TSHBP01222 138 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms