RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 IGLV4-60A0A075B6I1 120 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 TRAV1-1A0A0B4J248 108 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 C19orf71A6NCJ1 209 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 PANO1I0J062 215 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 LYZL1Q6UWQ5 148 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 MED9Q9NWA0 146 aa9.84□□□□□ -0.83
SKA3-204ENST00000462482 RAB19A4D1S5 217 aa9.83□□□□□ -0.84
SKA3-204ENST00000462482 NTF3P20783 257 aa9.83□□□□□ -0.84
SKA3-204ENST00000462482 MEF2BQ02080 365 aaPredicted RBP9.83□□□□□ -0.84
SKA3-204ENST00000462482 CIRBPQ14011 172 aaKnown RBP9.83□□□□□ -0.84
SKA3-204ENST00000462482 AMMECR1LQ6DCA0 310 aa9.83□□□□□ -0.84
SKA3-204ENST00000462482 C7orf33Q8WU49 177 aa9.83□□□□□ -0.84
SKA3-204ENST00000462482 LRP1Q07954 4544 aaKnown RBP9.83□□□□□ -0.84
SKA3-204ENST00000462482 HMCN2Q8NDA2 5059 aa9.82□□□□□ -0.84
SKA3-204ENST00000462482 TWIST1Q15672 202 aa9.82□□□□□ -0.84
SKA3-204ENST00000462482 SMIM15Q7Z3B0 74 aa9.82□□□□□ -0.84
SKA3-204ENST00000462482 A0A087WYN8 130 aa9.81□□□□□ -0.84
SKA3-204ENST00000462482 IGKV3OR2-268A0A0C4DH90 116 aa9.81□□□□□ -0.84
SKA3-204ENST00000462482 GAGE12HA6NDE8 117 aa9.81□□□□□ -0.84
SKA3-204ENST00000462482 C9orf62Q8N4C0 152 aa9.81□□□□□ -0.84
SKA3-204ENST00000462482 GFRA4Q9GZZ7 299 aa9.81□□□□□ -0.84
SKA3-204ENST00000462482 CHTF8P0CG12 524 aa9.79□□□□□ -0.84
SKA3-204ENST00000462482 CTRLP40313 264 aa9.79□□□□□ -0.84
SKA3-204ENST00000462482 RPS10P46783 165 aaKnown RBP9.79□□□□□ -0.84
SKA3-204ENST00000462482 SPACA4Q8TDM5 124 aa9.79□□□□□ -0.84
SKA3-204ENST00000462482 FAT3Q8TDW7 4589 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 NCR2O95944 276 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 BCL2P10415 239 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 TAGLN2P37802 199 aaKnown RBP9.78□□□□□ -0.84
SKA3-204ENST00000462482 RNASEKQ6P5S7 137 aaKnown RBP9.78□□□□□ -0.84
SKA3-204ENST00000462482 NUDT10Q8NFP7 164 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 NUDT11Q96G61 164 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 RPP21Q9H633 154 aaKnown RBP9.78□□□□□ -0.84
SKA3-204ENST00000462482 PKIGQ9Y2B9 76 aa9.78□□□□□ -0.84
SKA3-204ENST00000462482 NDUFS6O75380 124 aaKnown RBP9.77□□□□□ -0.85
SKA3-204ENST00000462482 APCSP02743 223 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 SLPIP03973 132 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 COX6A2Q02221 97 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 MAJINQ3KP22 176 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 HIGD2BQ4VC39 106 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 TEX261Q6UWH6 196 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 PLAC8Q9NZF1 115 aa9.77□□□□□ -0.85
SKA3-204ENST00000462482 TRBV20OR9-2A0A075B6H5 130 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 H7C423 109 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 C15orf56Q8N910 161 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 GATD1Q8NB37 220 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 GTSF1Q8WW33 167 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 CHCHD10Q8WYQ3 142 aaPredicted RBP9.76□□□□□ -0.85
SKA3-204ENST00000462482 BTF3L4Q96K17 158 aa9.76□□□□□ -0.85
SKA3-204ENST00000462482 TRAV26-2A0A0B4J265 109 aa9.75□□□□□ -0.85
SKA3-204ENST00000462482 IGKV2-24A0A0C4DH68 120 aa9.75□□□□□ -0.85
SKA3-204ENST00000462482 PHOX2AO14813 284 aa9.75□□□□□ -0.85
SKA3-204ENST00000462482 TMEM101Q96IK0 257 aa9.75□□□□□ -0.85
SKA3-204ENST00000462482 CNFNQ9BYD5 112 aa9.75□□□□□ -0.85
SKA3-204ENST00000462482 MT1HL1P0DM35 61 aa9.74□□□□□ -0.85
SKA3-204ENST00000462482 FGF6P10767 208 aa9.74□□□□□ -0.85
SKA3-204ENST00000462482 RNASE7Q9H1E1 156 aaKnown RBP9.74□□□□□ -0.85
SKA3-204ENST00000462482 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.73□□□□□ -0.85
SKA3-204ENST00000462482 IGKV2-29A2NJV5 120 aaPredicted RBP9.73□□□□□ -0.85
SKA3-204ENST00000462482 ZNF25P17030 456 aaPredicted RBP9.73□□□□□ -0.85
SKA3-204ENST00000462482 PMCHP20382 165 aa9.73□□□□□ -0.85
SKA3-204ENST00000462482 Q6ZNX1 250 aa9.73□□□□□ -0.85
SKA3-204ENST00000462482 STPG4Q8N801 248 aa9.73□□□□□ -0.85
SKA3-204ENST00000462482 BORCS7Q96B45 105 aa9.73□□□□□ -0.85
SKA3-204ENST00000462482 LINC00474Q9P2X8 69 aa9.73□□□□□ -0.85
SKA3-204ENST00000462482 GVQW2A0A096LPI5 108 aaPredicted RBP9.72□□□□□ -0.85
SKA3-204ENST00000462482 SDHAF1A6NFY7 115 aa9.72□□□□□ -0.85
SKA3-204ENST00000462482 SLC51BQ86UW2 128 aa9.72□□□□□ -0.85
SKA3-204ENST00000462482 PRSS3P2Q8NHM4 247 aa9.72□□□□□ -0.85
SKA3-204ENST00000462482 RPL39LQ96EH5 51 aaKnown RBP9.72□□□□□ -0.85
SKA3-204ENST00000462482 UBR4Q5T4S7 5183 aa9.72□□□□□ -0.85
SKA3-204ENST00000462482 I3L3M4 83 aa9.71□□□□□ -0.86
SKA3-204ENST00000462482 GATCO43716 136 aaKnown RBP9.71□□□□□ -0.86
SKA3-204ENST00000462482 OR5A1Q8NGJ0 315 aa9.71□□□□□ -0.86
SKA3-204ENST00000462482 LYPD6BQ8NI32 183 aa9.71□□□□□ -0.86
SKA3-204ENST00000462482 OCC1Q8TAD7 63 aa9.71□□□□□ -0.86
SKA3-204ENST00000462482 A8MWL6 223 aa9.7□□□□□ -0.86
SKA3-204ENST00000462482 XCL1P47992 114 aa9.7□□□□□ -0.86
SKA3-204ENST00000462482 FAM210AQ96ND0 272 aa9.7□□□□□ -0.86
SKA3-204ENST00000462482 IGHV1-58A0A0C4DH39 117 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 K7EN84 100 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 FOXI1Q12951 378 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 SS18Q15532 418 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 PKHD1L1Q86WI1 4243 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 MRAP2Q96G30 205 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 ST20Q9HBF5 79 aa9.69□□□□□ -0.86
SKA3-204ENST00000462482 ZNF561-AS1K7EIQ3 104 aa9.68□□□□□ -0.86
SKA3-204ENST00000462482 CCL25O15444 150 aa9.68□□□□□ -0.86
SKA3-204ENST00000462482 PRR3P79522 188 aaKnown RBP9.68□□□□□ -0.86
SKA3-204ENST00000462482 A0A096LNI7 61 aa9.67□□□□□ -0.86
SKA3-204ENST00000462482 TRBV6-5A0A0K0K1A5 114 aa9.67□□□□□ -0.86
SKA3-204ENST00000462482 LINC00959A0A1B0GUT2 108 aa9.67□□□□□ -0.86
SKA3-204ENST00000462482 FOXA3P55318 350 aaPredicted RBP9.67□□□□□ -0.86
SKA3-204ENST00000462482 REG3GQ6UW15 175 aa9.67□□□□□ -0.86
SKA3-204ENST00000462482 CARD19Q96LW7 228 aa9.67□□□□□ -0.86
SKA3-204ENST00000462482 TMEM250H0YL14 139 aa9.66□□□□□ -0.86
SKA3-204ENST00000462482 CEBPGP53567 150 aa9.66□□□□□ -0.86
SKA3-204ENST00000462482 FAM231DQ6ZW35 169 aa9.66□□□□□ -0.86
SKA3-204ENST00000462482 TCTE3Q8IZS6 198 aa9.66□□□□□ -0.86
SKA3-204ENST00000462482 LINC01600Q96MT4 127 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms