RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SH2D6Q7Z4S9 175 aa8.7□□□□□ -1.02
NPHP4-204ENST00000460696 C9JAW5 83 aa8.7□□□□□ -1.02
NPHP4-204ENST00000460696 E9PLD3 99 aa8.7□□□□□ -1.02
NPHP4-204ENST00000460696 CEMP1Q6PRD7 247 aaPredicted RBP8.7□□□□□ -1.02
NPHP4-204ENST00000460696 PRIMA1Q86XR5 153 aa8.7□□□□□ -1.02
NPHP4-204ENST00000460696 C11orf68Q9H3H3 251 aaKnown RBP8.7□□□□□ -1.02
NPHP4-204ENST00000460696 TRBV7-9A0A0J9YWB2 115 aa8.69□□□□□ -1.02
NPHP4-204ENST00000460696 IGLV1-40P01703 118 aa8.69□□□□□ -1.02
NPHP4-204ENST00000460696 TEX48A0A1B0GUV7 120 aa8.69□□□□□ -1.02
NPHP4-204ENST00000460696 NOP10Q9NPE3 64 aaKnown RBP8.69□□□□□ -1.02
NPHP4-204ENST00000460696 PRO1854Q9UHT4 67 aa8.69□□□□□ -1.02
NPHP4-204ENST00000460696 C18orf65Q6ZTR6 163 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 WFDC2Q14508 124 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 COPS9Q8WXC6 57 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 SPAG8Q99932 426 aaPredicted RBP8.68□□□□□ -1.02
NPHP4-204ENST00000460696 TMEM89A2RUT3 159 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 PRB2P02812 416 aaPredicted RBP8.68□□□□□ -1.02
NPHP4-204ENST00000460696 Q6YL49 198 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 COX8CQ7Z4L0 72 aa8.68□□□□□ -1.02
NPHP4-204ENST00000460696 DCANP1Q8TF63 244 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 C1QTNF4Q9BXJ3 329 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 TSSC4Q9Y5U2 329 aaPredicted RBP8.67□□□□□ -1.02
NPHP4-204ENST00000460696 NEXN-AS1Q8NBZ9 246 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 F8W1H4 67 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 LINC00158P58513 81 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 MORN3Q6PF18 240 aaPredicted RBP8.67□□□□□ -1.02
NPHP4-204ENST00000460696 TIMM17AQ99595 171 aa8.67□□□□□ -1.02
NPHP4-204ENST00000460696 SNCGO76070 127 aa8.66□□□□□ -1.02
NPHP4-204ENST00000460696 CMC4P56277 68 aaPredicted RBP8.66□□□□□ -1.02
NPHP4-204ENST00000460696 C20orf203Q8NBC4 194 aa8.66□□□□□ -1.02
NPHP4-204ENST00000460696 PROK1P58294 105 aa8.66□□□□□ -1.02
NPHP4-204ENST00000460696 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.66□□□□□ -1.02
NPHP4-204ENST00000460696 DNAL4O96015 105 aa8.66□□□□□ -1.02
NPHP4-204ENST00000460696 RNASE1P07998 156 aaKnown RBP8.66□□□□□ -1.02
NPHP4-204ENST00000460696 LRBAP50851 2863 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 KLLNB2CW77 178 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 HHLA3Q9XRX5 114 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 IGHV4-4A0A075B6R2 117 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 A4D1N5 150 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 H3BMM0 161 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 GAGE6Q13070 117 aa8.65□□□□□ -1.02
NPHP4-204ENST00000460696 CITED2Q99967 270 aaPredicted RBP8.65□□□□□ -1.02
NPHP4-204ENST00000460696 MAP6D1Q9H9H5 199 aa8.65□□□□□ -1.03
NPHP4-204ENST00000460696 TRAV8-3A0A0A6YYJ7 113 aa8.64□□□□□ -1.03
NPHP4-204ENST00000460696 ZNF702PQ9H963 129 aa8.64□□□□□ -1.03
NPHP4-204ENST00000460696 A0A096LPF7 62 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 M0QY20 66 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 LEPROTO15243 131 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 CRIP2P52943 208 aaPredicted RBP8.63□□□□□ -1.03
NPHP4-204ENST00000460696 C2orf82Q6UX34 121 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 MUSTN1Q8IVN3 82 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 TMEM243Q9BU79 118 aa8.63□□□□□ -1.03
NPHP4-204ENST00000460696 HIVEP1P15822 2718 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 TRBV20-1A0A075B6N2 111 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 LGALS9O00182 355 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 ATXN8Q156A1 80 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 DAND5Q8N907 189 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 C4orf3Q8WVX3 66 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 TM2D2Q9BX73 214 aa8.62□□□□□ -1.03
NPHP4-204ENST00000460696 SOCS3O14543 225 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 CFC1BP0CG36 223 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 CFC1P0CG37 223 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 DEFB114Q30KQ6 69 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 C6orf226Q5I0X4 101 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 TTC32Q5I0X7 151 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 NIPBLQ6KC79 2804 aaeCLIP8.61□□□□□ -1.03
NPHP4-204ENST00000460696 PAX4O43316 350 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 POLR2KP53803 58 aaKnown RBP8.61□□□□□ -1.03
NPHP4-204ENST00000460696 ODF3Q96PU9 254 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 CRYGDP07320 174 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 Q6ZSV7 163 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 Q9H8V8 135 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 SPANXA1Q9NS26 97 aa8.61□□□□□ -1.03
NPHP4-204ENST00000460696 SMG1Q96Q15 3661 aaKnown RBP8.61□□□□□ -1.03
NPHP4-204ENST00000460696 CRLF1O75462 422 aa8.6□□□□□ -1.03
NPHP4-204ENST00000460696 PFN2P35080 140 aa8.6□□□□□ -1.03
NPHP4-204ENST00000460696 IGLV2-18A0A075B6J9 118 aa8.6□□□□□ -1.03
NPHP4-204ENST00000460696 TRBV27A0A0K0K1C4 114 aa8.6□□□□□ -1.03
NPHP4-204ENST00000460696 MALP21145 153 aa8.6□□□□□ -1.03
NPHP4-204ENST00000460696 GAGE12HA6NDE8 117 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 IGHV3-30-3P0DP02 117 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 CFAP161Q6P656 301 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 C10orf126Q8N4M7 172 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 A0A1B0GV72 72 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 Q6ZUT4 128 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 SLC25A20O43772 301 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 CLPSL2Q6UWE3 100 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 Q6ZTI0 123 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 PTH2Q96A98 100 aa8.59□□□□□ -1.03
NPHP4-204ENST00000460696 TRBV7-3A0A075B6L6 115 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 HERVK_113P63121 156 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 CELSR2Q9HCU4 2923 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 IGLV4-3A0A075B6K6 122 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 CRPP02741 224 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 RNF152Q8N8N0 203 aa8.58□□□□□ -1.04
NPHP4-204ENST00000460696 A0A0J9YY99 117 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 PPDPFLQ8WWR9 84 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 C9orf85Q96MD7 179 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 TRAV8-4A0A0B4J246 113 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 CKS1BP61024 79 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms