RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 Q6ZSN1 163 aa10.93□□□□□ -0.66
LDLR-202ENST00000455727 PLEKHB2Q96CS7 222 aa10.93□□□□□ -0.66
LDLR-202ENST00000455727 NF1P21359 2839 aa10.93□□□□□ -0.66
LDLR-202ENST00000455727 SAP30O75446 220 aa10.92□□□□□ -0.66
LDLR-202ENST00000455727 XCL2Q9UBD3 114 aa10.92□□□□□ -0.66
LDLR-202ENST00000455727 A0A0J9YY99 117 aa10.92□□□□□ -0.66
LDLR-202ENST00000455727 C1orf158Q8N1D5 194 aa10.92□□□□□ -0.66
LDLR-202ENST00000455727 AMELXQ99217 191 aa10.92□□□□□ -0.66
LDLR-202ENST00000455727 TMEM238LA0A1B0GVL6 79 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 TMEM223A0PJW6 202 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 A6NJY4 79 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 IL17DQ8TAD2 202 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 SPANXB1Q9NS25 103 aaPredicted RBP10.91□□□□□ -0.66
LDLR-202ENST00000455727 MRPL16Q9NX20 251 aaKnown RBP10.91□□□□□ -0.66
LDLR-202ENST00000455727 J3QQQ9 107 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 COTL1Q14019 142 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 WNK1Q9H4A3 2382 aa10.91□□□□□ -0.66
LDLR-202ENST00000455727 LEPROTO15243 131 aa10.9□□□□□ -0.66
LDLR-202ENST00000455727 TSPEAR-AS2P59090 65 aa10.9□□□□□ -0.66
LDLR-202ENST00000455727 SRSF9Q13242 221 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-202ENST00000455727 FAM104AQ969W3 186 aa10.9□□□□□ -0.66
LDLR-202ENST00000455727 ZNF479Q96JC4 524 aa10.9□□□□□ -0.66
LDLR-202ENST00000455727 ZNF22P17026 224 aaPredicted RBP10.9□□□□□ -0.67
LDLR-202ENST00000455727 AZU1P20160 251 aa10.9□□□□□ -0.67
LDLR-202ENST00000455727 SLC25A29Q8N8R3 303 aa10.9□□□□□ -0.67
LDLR-202ENST00000455727 FAM110AQ9BQ89 295 aa10.9□□□□□ -0.67
LDLR-202ENST00000455727 SPANXA1Q9NS26 97 aa10.9□□□□□ -0.67
LDLR-202ENST00000455727 Q9UF83 564 aa10.9□□□□□ -0.67
LDLR-202ENST00000455727 RRN3P1Q2M238 152 aa10.89□□□□□ -0.67
LDLR-202ENST00000455727 CHCHD7Q9BUK0 85 aa10.89□□□□□ -0.67
LDLR-202ENST00000455727 LGALS3P17931 250 aaKnown RBP10.89□□□□□ -0.67
LDLR-202ENST00000455727 UBE2D1P51668 147 aa10.89□□□□□ -0.67
LDLR-202ENST00000455727 MRPS36P82909 103 aaKnown RBP10.89□□□□□ -0.67
LDLR-202ENST00000455727 ZNF418Q8TF45 676 aaPredicted RBP10.89□□□□□ -0.67
LDLR-202ENST00000455727 ANK3Q12955 4377 aaKnown RBP10.88□□□□□ -0.67
LDLR-202ENST00000455727 A0A0J9YXV3 536 aa10.88□□□□□ -0.67
LDLR-202ENST00000455727 G3V4G9 280 aa10.88□□□□□ -0.67
LDLR-202ENST00000455727 HILS1P60008 231 aa10.88□□□□□ -0.67
LDLR-202ENST00000455727 NDUFA7O95182 113 aa10.87□□□□□ -0.67
LDLR-202ENST00000455727 UBE2D4Q9Y2X8 147 aa10.87□□□□□ -0.67
LDLR-202ENST00000455727 KMT2BQ9UMN6 2715 aaPredicted RBP10.87□□□□□ -0.67
LDLR-202ENST00000455727 IGLV1-51P01701 117 aa10.86□□□□□ -0.67
LDLR-202ENST00000455727 TMEM263Q8WUH6 116 aaKnown RBP10.86□□□□□ -0.67
LDLR-202ENST00000455727 ITPR2Q14571 2701 aa10.86□□□□□ -0.67
LDLR-202ENST00000455727 ACANP16112 2415 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 IGHV3-30P01768 117 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 IGHV3-30-5P0DP03 117 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 CUBNO60494 3623 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 IGHV3OR16-12A0A075B7B8 117 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 ADARB2-AS1A8MUL3 147 aa10.85□□□□□ -0.67
LDLR-202ENST00000455727 CEMP1Q6PRD7 247 aaPredicted RBP10.84□□□□□ -0.67
LDLR-202ENST00000455727 TRGV1A0A0A0MS02 117 aa10.84□□□□□ -0.67
LDLR-202ENST00000455727 TRBV10-1A0A0K0K1A3 114 aa10.84□□□□□ -0.67
LDLR-202ENST00000455727 TINCRA0A1B0GVN0 87 aa10.84□□□□□ -0.67
LDLR-202ENST00000455727 TIMM21Q9BVV7 248 aa10.84□□□□□ -0.67
LDLR-202ENST00000455727 GIG44P09565 113 aaPredicted RBP10.83□□□□□ -0.68
LDLR-202ENST00000455727 DAZ2Q13117 558 aaKnown RBP10.83□□□□□ -0.68
LDLR-202ENST00000455727 C19orf73Q9NVV2 129 aa10.83□□□□□ -0.68
LDLR-202ENST00000455727 TRAV4A0A0B4J268 109 aa10.83□□□□□ -0.68
LDLR-202ENST00000455727 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.82□□□□□ -0.68
LDLR-202ENST00000455727 IGKV2-29A2NJV5 120 aaPredicted RBP10.82□□□□□ -0.68
LDLR-202ENST00000455727 F8W1H4 67 aa10.82□□□□□ -0.68
LDLR-202ENST00000455727 PGPEP1Q9NXJ5 209 aa10.82□□□□□ -0.68
LDLR-202ENST00000455727 IGHV3-38A0A0C4DH36 116 aa10.81□□□□□ -0.68
LDLR-202ENST00000455727 IGHV3-30-3P0DP02 117 aa10.81□□□□□ -0.68
LDLR-202ENST00000455727 NDUFA11Q86Y39 141 aa10.81□□□□□ -0.68
LDLR-202ENST00000455727 HELZ2Q9BYK8 2649 aaKnown RBP10.81□□□□□ -0.68
LDLR-202ENST00000455727 Q6ZTI0 123 aa10.81□□□□□ -0.68
LDLR-202ENST00000455727 C1QTNF4Q9BXJ3 329 aa10.81□□□□□ -0.68
LDLR-202ENST00000455727 IGHV1-58A0A0C4DH39 117 aa10.8□□□□□ -0.68
LDLR-202ENST00000455727 C16orf74Q96GX8 76 aa10.8□□□□□ -0.68
LDLR-202ENST00000455727 UNC79Q9P2D8 2635 aa10.8□□□□□ -0.68
LDLR-202ENST00000455727 K7EQD1 137 aa10.8□□□□□ -0.68
LDLR-202ENST00000455727 RPL24P83731 157 aaKnown RBP10.8□□□□□ -0.68
LDLR-202ENST00000455727 RPL36AP83881 106 aaKnown RBP10.8□□□□□ -0.68
LDLR-202ENST00000455727 Q6ZUT4 128 aa10.8□□□□□ -0.68
LDLR-202ENST00000455727 DAZ4Q86SG3 579 aaKnown RBP10.8□□□□□ -0.68
LDLR-202ENST00000455727 RPL36ALQ969Q0 106 aaKnown RBP10.8□□□□□ -0.68
LDLR-202ENST00000455727 DAZ3Q9NR90 486 aaKnown RBP10.8□□□□□ -0.68
LDLR-202ENST00000455727 IGHV3-64A0A075B6Q5 118 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 CIDEAO60543 219 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 MTORP42345 2549 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 TMEM238C9JI98 176 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 TSPAN13O95857 204 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 CFC1BP0CG36 223 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 CFC1P0CG37 223 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 RNASE13Q5GAN3 156 aaKnown RBP10.79□□□□□ -0.68
LDLR-202ENST00000455727 C10orf126Q8N4M7 172 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 CSNK1G2-AS1Q8NCQ2 148 aa10.79□□□□□ -0.68
LDLR-202ENST00000455727 SETD2Q9BYW2 2564 aaPredicted RBP10.78□□□□□ -0.68
LDLR-202ENST00000455727 TEX48A0A1B0GUV7 120 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 PLAC8L1A1L4L8 177 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 H3BMG7 143 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 APOMO95445 188 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 TIRAPP58753 221 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 VSIG2Q96IQ7 327 aa10.78□□□□□ -0.68
LDLR-202ENST00000455727 NOP10Q9NPE3 64 aaKnown RBP10.78□□□□□ -0.68
LDLR-202ENST00000455727 CSDC2Q9Y534 153 aaKnown RBP10.78□□□□□ -0.68
LDLR-202ENST00000455727 SETXQ7Z333 2677 aaKnown RBP10.78□□□□□ -0.68
LDLR-202ENST00000455727 A0A0J9YXY3 114 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 149.6 ms