RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859		M0QY20	66 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	TRGC1	P0CF51	173 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859		Q0VG73	95 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	NUDT10	Q8NFP7	164 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	SMIM12	Q96EX1	92 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	NUDT11	Q96G61	164 aa		5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	RPP21	Q9H633	154 aa	Known RBP	5.69	□□□□□ -1.5
RFX3-209	ENST00000451859	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	IGHV1-24	A0A0C4DH33	117 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859		F2Z2F3	143 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859		K7EN84	100 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	NTF3	P20783	257 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	PKIA	P61925	76 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	RBX1	P62877	108 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	TWIST1	Q15672	202 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	TMEM97	Q5BJF2	176 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	RASL11A	Q6T310	242 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	LINC00269	Q8N2A0	174 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	OCC1	Q8TAD7	63 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	DPH3P1	Q9H4G8	78 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	BIN3	Q9NQY0	253 aa		5.68	□□□□□ -1.5
RFX3-209	ENST00000451859	IGLV10-54	A0A075B6I4	117 aa		5.67	□□□□□ -1.5
RFX3-209	ENST00000451859	USP17L23	D6RBM5	183 aa		5.67	□□□□□ -1.5
RFX3-209	ENST00000451859	CTRL	P40313	264 aa		5.67	□□□□□ -1.5
RFX3-209	ENST00000451859	MIA	Q16674	131 aa		5.67	□□□□□ -1.5
RFX3-209	ENST00000451859	TRAV26-2	A0A0B4J265	109 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	UBE2L6	O14933	153 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	TAGLN2	P37802	199 aa	Known RBP	5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	BLOC1S1	P78537	153 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	IQCJ	Q1A5X6	159 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	C14orf177	Q52M58	125 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859		Q6ZSA8	131 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	SCX	Q7RTU7	201 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	TMEM243	Q9BU79	118 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	NIT2	Q9NQR4	276 aa		5.66	□□□□□ -1.5
RFX3-209	ENST00000451859	IGLV4-60	A0A075B6I1	120 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	IGKV3OR2-268	A0A0C4DH90	116 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	GATC	O43716	136 aa	Known RBP	5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	AMT	P48728	403 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	REG3A	Q06141	175 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	COTL1	Q14019	142 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	GTSF1	Q8WW33	167 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	RPL39L	Q96EH5	51 aa	Known RBP	5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	PGLYRP4	Q96LB8	373 aa		5.65	□□□□□ -1.5
RFX3-209	ENST00000451859	PKHD1L1	Q86WI1	4243 aa		5.65	□□□□□ -1.51
RFX3-209	ENST00000451859	TMEM250	H0YL14	139 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	PLA2G1B	P04054	148 aa	Known RBP	5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	PRSS1	P07477	247 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	FOXA3	P55318	350 aa	Predicted RBP	5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	SMIM15	Q7Z3B0	74 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	C20orf203	Q8NBC4	194 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	EIF5A2	Q9GZV4	153 aa	Known RBP	5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	GFRA4	Q9GZZ7	299 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859	PRR34	Q9NV39	138 aa		5.64	□□□□□ -1.51
RFX3-209	ENST00000451859		A0A1B0GVG6	124 aa		5.63	□□□□□ -1.51
RFX3-209	ENST00000451859	WDR73	Q6P4I2	378 aa		5.63	□□□□□ -1.51
RFX3-209	ENST00000451859	GATD1	Q8NB37	220 aa		5.63	□□□□□ -1.51
RFX3-209	ENST00000451859	SMIM7	Q9BQ49	75 aa		5.63	□□□□□ -1.51
RFX3-209	ENST00000451859	CHAC1	Q9BUX1	264 aa		5.63	□□□□□ -1.51
RFX3-209	ENST00000451859		A8MWL6	223 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	APCS	P02743	223 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	AMMECR1L	Q6DCA0	310 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	KRTAP26-1	Q6PEX3	210 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	CIRBP-AS1	Q8TBR5	109 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	BORCS7	Q96B45	105 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	CNFN	Q9BYD5	112 aa		5.62	□□□□□ -1.51
RFX3-209	ENST00000451859	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	hDV102S1	A0JD36	115 aa		5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	IGKV2-29	A2NJV5	120 aa	Predicted RBP	5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	ZNF727	A8MUV8	499 aa		5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	SRSF3	P84103	164 aa	Known RBP	5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	RNASEK	Q6P5S7	137 aa	Known RBP	5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	FAM231D	Q6ZW35	169 aa		5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	LYPD6B	Q8NI32	183 aa		5.61	□□□□□ -1.51
RFX3-209	ENST00000451859	TRAV8-4	A0A0B4J246	113 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859		A0A1B0GUV1	79 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	SDHAF1	A6NFY7	115 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	HIGD1C	A8MV81	97 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	GAS8-AS1	O95177	125 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	SRP19	P09132	144 aa	Known RBP	5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	PMCH	P20382	165 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	LINC01551	Q86U37	167 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	FAM210A	Q96ND0	272 aa		5.6	□□□□□ -1.51
RFX3-209	ENST00000451859	FAT3	Q8TDW7	4589 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859		A0A1B0GUT8	65 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	GAGE12H	A6NDE8	117 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	PANO1	I0J062	215 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	FGF6	P10767	208 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	CT83	Q5H943	113 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	DGAT2L7P	Q6IED9	249 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	C9orf163	Q8N9P6	203 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	AP5S1	Q9NUS5	200 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	TMEM242	Q9NWH2	141 aa		5.59	□□□□□ -1.51
RFX3-209	ENST00000451859	LRP1	Q07954	4544 aa	Known RBP	5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	SMKR1	H3BMG3	65 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	NCR2	O95944	276 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	RPS10	P46783	165 aa	Known RBP	5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	HIGD2B	Q4VC39	106 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	TEX261	Q6UWH6	196 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	AMN1	Q8IY45	258 aa		5.58	□□□□□ -1.52

Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms