RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SSTP61278 116 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 RBX1P62877 108 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 CENPWQ5EE01 88 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 RASL11AQ6T310 242 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 LINC00269Q8N2A0 174 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 C9orf163Q8N9P6 203 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 CIRBP-AS1Q8TBR5 109 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 PGLYRP4Q96LB8 373 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 TPPP3Q9BW30 176 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 NIT2Q9NQR4 276 aa4.61□□□□□ -1.67
VPS41-208ENST00000448833 MUC21A0A0G2JKD1 596 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 MUC21A0A140T8X8 626 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 SMLR1H3BR10 107 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 M0QY20 66 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 UBE2L6O14933 153 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 MGPP08493 103 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 IGLC6P0CF74 106 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 REG3AQ06141 175 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 LINC01620Q4KN68 170 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 TEX261Q6UWH6 196 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 NTM-AS1Q6ZSK4 140 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 SMIM15Q7Z3B0 74 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 C9orf62Q8N4C0 152 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 TMEM243Q9BU79 118 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 DPH3P1Q9H4G8 78 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 MED9Q9NWA0 146 aa4.6□□□□□ -1.67
VPS41-208ENST00000448833 C19orf71A6NCJ1 209 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 NTF3P20783 257 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 SULT1A2P50226 295 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 GAGE6Q13070 117 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 COTL1Q14019 142 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 SUMO4Q6EEV6 95 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 DPH3Q96FX2 82 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 RNF185Q96GF1 192 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 CDIP1Q9H305 208 aa4.59□□□□□ -1.67
VPS41-208ENST00000448833 IGHV3-64A0A075B6Q5 118 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 H7C423 109 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 PRSS1P07477 247 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 NKX2-5P52952 324 aaPredicted RBP4.58□□□□□ -1.68
VPS41-208ENST00000448833 RPL37AP61513 92 aaKnown RBP4.58□□□□□ -1.68
VPS41-208ENST00000448833 CNBPP62633 177 aaKnown RBP4.58□□□□□ -1.68
VPS41-208ENST00000448833 TWIST1Q15672 202 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 LYZL1Q6UWQ5 148 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 Q6ZNX1 250 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 SLC51BQ86UW2 128 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 LINC00469Q8N7U9 141 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 PKIGQ9Y2B9 76 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 CHTOPQ9Y3Y2 248 aaKnown RBP4.58□□□□□ -1.68
VPS41-208ENST00000448833 DNAH8Q96JB1 4490 aa4.58□□□□□ -1.68
VPS41-208ENST00000448833 hDV102S1A0JD36 115 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 RAB19A4D1S5 217 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 NCR2O95944 276 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 SCGB1D1O95968 90 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 BCL2P10415 239 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 CTRLP40313 264 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 AMTP48728 403 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 SDIM1Q6ZPB5 146 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 CNFNQ9BYD5 112 aa4.57□□□□□ -1.68
VPS41-208ENST00000448833 A8MWL6 223 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 ZNF561-AS1K7EIQ3 104 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 MAJINQ3KP22 176 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 AMMECR1LQ6DCA0 310 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 KRTAP26-1Q6PEX3 210 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 CLPSL2Q6UWE3 100 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 TCTE3Q8IZS6 198 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 C20orf203Q8NBC4 194 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 NUDT10Q8NFP7 164 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 BORCS7Q96B45 105 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 NUDT11Q96G61 164 aa4.56□□□□□ -1.68
VPS41-208ENST00000448833 RPP21Q9H633 154 aaKnown RBP4.56□□□□□ -1.68
VPS41-208ENST00000448833 TRBV20OR9-2A0A075B6H5 130 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 IGLV10-54A0A075B6I4 117 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 TMEM250H0YL14 139 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 ZNF25P17030 456 aaPredicted RBP4.55□□□□□ -1.68
VPS41-208ENST00000448833 KRTAP10-4P60372 401 aaPredicted RBP4.55□□□□□ -1.68
VPS41-208ENST00000448833 BLOC1S1P78537 153 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 SMAGPQ0VAQ4 97 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 CIRBPQ14011 172 aaKnown RBP4.55□□□□□ -1.68
VPS41-208ENST00000448833 Q6ZRU5 148 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 AKAP14Q86UN6 197 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 BTF3L4Q96K17 158 aa4.55□□□□□ -1.68
VPS41-208ENST00000448833 IGLV4-60A0A075B6I1 120 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 A0A1B0GVG6 124 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 APCSP02743 223 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 RPS10P46783 165 aaKnown RBP4.54□□□□□ -1.68
VPS41-208ENST00000448833 OCC1Q8TAD7 63 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 C7orf33Q8WU49 177 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 TMEM101Q96IK0 257 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 LINC00474Q9P2X8 69 aa4.54□□□□□ -1.68
VPS41-208ENST00000448833 FAM231BA6NCW3 169 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 I3L3M4 83 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 GATCO43716 136 aaKnown RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 NDUFS6O75380 124 aaKnown RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 PPP1R17O96001 155 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 PMCHP20382 165 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 FOXA3P55318 350 aaPredicted RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 CT83Q5H943 113 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 RNASEKQ6P5S7 137 aaKnown RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 FAM231DQ6ZW35 169 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 SLC7A5P1Q8MH63 180 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms