RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 COX7CP15954 63 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 PEA15Q15121 130 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 LINC00269Q8N2A0 174 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 CPSF1Q10570 1443 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 MUC5BQ9HC84 5762 aaPredicted RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 CROCCQ5TZA2 2017 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 RP1P56715 2156 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 MALRD1Q5VYJ5 2156 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 RTL8CO15255 209 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 FAUP35544 74 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 SLC48A1Q6P1K1 146 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 PPDPFLQ8WWR9 84 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 CYTL1Q9NRR1 136 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 NYNRINQ9P2P1 1898 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 LHFPL6Q9Y693 200 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 RTTNQ86VV8 2226 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 SEC16AO15027 2179 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 PTPRSQ13332 1948 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 BSNQ9UPA5 3926 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 MUC21A0A140T8X8 626 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 C2orf70A6NJV1 201 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 E7EQL1 145 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 RHOHQ15669 191 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 ZCCHC23Q6ZST2 131 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 Q8TAT8 98 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 S100A13Q99584 98 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 SDK2Q58EX2 2172 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 DDX60LQ5H9U9 1706 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 NFAT5O94916 1531 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 KIAA0100Q14667 2235 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 TRAV2A0A0B4J234 112 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 PHIPQ8WWQ0 1821 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 DDX60Q8IY21 1712 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 MYO16Q9Y6X6 1858 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 CADP27708 2225 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 RBAKDNA6NC62 111 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 MT-ATP8P03928 68 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 FAM213BQ8TBF2 198 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 TIMM21Q9BVV7 248 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 ORMDL1Q9P0S3 153 aa1.38□□□□□ -2.19
CCDC88A-208ENST00000444458 CD163L1Q9NR16 1453 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 HEATR5BQ9P2D3 2071 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 DOPEY2Q9Y3R5 2298 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 IGKCP01834 107 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 PYY3Q5JQD4 70 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 C6orf52Q5T4I8 152 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 Q8N8P6 123 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 MGST2Q99735 147 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 CCL26Q9Y258 94 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 KIF26AQ9ULI4 1882 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 LTBP2Q14767 1821 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 MGAMO43451 1857 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 TRBV6-8A0A0A6YYG3 113 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 CRYM-AS1A6NIL9 109 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 SLC25A6P12236 298 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 LCN9Q8WX39 176 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 DPH3P1Q9H4G8 78 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 PRR34Q9NV39 138 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 ANAPC11Q9NYG5 84 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 HELZP42694 1942 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 TNRC18O15417 2968 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 ABCA4P78363 2273 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 NEBP20929 6669 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 A0A087WSZ3 146 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 TRAV13-2A0A0B4J235 113 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 NAP1L6A6NFF2 107 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 H3BQ15 152 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 GYPAP02724 150 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 C9orf116Q5BN46 136 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 MRPL35Q9NZE8 188 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 NACAE9PAV3 2078 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 COL11A1P12107 1806 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 TSC2P49815 1807 aa1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 SPTBN1Q01082 2364 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-208ENST00000444458 H3BQF6 201 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 IGLC1P0CG04 106 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 KRTAP5-4Q6L8H1 288 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 COMMD6Q7Z4G1 85 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 ALPK3Q96L96 1907 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 SLX4Q8IY92 1834 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 A0A1B0GUL6 1792 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 TRBV10-3A0A0K0K1G6 114 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 CYB5AP00167 134 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 IGKV3-11P04433 115 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 ASIPP42127 132 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 ZNF833PQ6ZTB9 187 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 FP248Q71RG6 208 aaPredicted RBP1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 DOT1LQ8TEK3 1739 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 MUC4Q99102 2169 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 FREM3P0C091 2139 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 MPV17LQ2QL34 196 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 C1orf137Q5JT78 98 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 SBSPONQ8IVN8 264 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 KLK9Q9UKQ9 250 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 MYH1P12882 1939 aa1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 MAP2P11137 1827 aaKnown RBP1.36□□□□□ -2.19
CCDC88A-208ENST00000444458 ATOX1O00244 68 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 DNAL4O96015 105 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 SEC11AP67812 179 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms