RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 ARHGAP32A7KAX9 2087 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 PLXNA4Q9HCM2 1894 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 THOC2Q8NI27 1593 aaKnown RBP2.41□□□□□ -2.02
VPS50-206ENST00000443443 PTPRFP10586 1907 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 TRBV6-7A0A0A0MS04 114 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 A0A1W2PNN7 141 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 ZNF815PA8K554 130 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 PDE6GP18545 87 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 TMEM170BQ5T4T1 132 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 FAM223AQ8IWN6 122 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 BPESC1Q9GZL8 116 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 WFDC10AQ9H1F0 79 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 NDUFA4L2Q9NRX3 87 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 PTPN23Q9H3S7 1636 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 HFM1A2PYH4 1435 aa2.41□□□□□ -2.02
VPS50-206ENST00000443443 CFAP74Q9C0B2 1584 aa2.4□□□□□ -2.02
VPS50-206ENST00000443443 PATJQ8NI35 1801 aa2.4□□□□□ -2.02
VPS50-206ENST00000443443 TOP2BQ02880 1626 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 MYO3AQ8NEV4 1616 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 IGLV3-32A0A0A0MS00 114 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 TRGV4A0A0C4DH28 118 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 PPP1R17O96001 155 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 KRTAP13-2Q52LG2 175 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 PSMG4Q5JS54 123 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 CFAP126Q5VTH2 177 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 CDC42SE2Q9NRR3 84 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 TMEM14CQ9P0S9 112 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 V9GYH0 126 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 KCPQ6ZWJ8 1503 aa2.4□□□□□ -2.03
VPS50-206ENST00000443443 NRXN1Q9ULB1 1477 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 DUOX2Q9NRD8 1548 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 HMGN4O00479 90 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 IGLV3-19P01714 112 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 IGLV3-1P01715 115 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 SMIM13P0DJ93 91 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 EFNA4P52798 201 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 SPAG11BQ08648 103 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 FAM74A4Q5TZK3 123 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 SPAG11AQ6PDA7 123 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 PPP1R1CQ8WVI7 109 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 DIDO1Q9BTC0 2240 aaKnown RBP2.39□□□□□ -2.03
VPS50-206ENST00000443443 ABCA8O94911 1581 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 KIAA2026Q5HYC2 2103 aa2.39□□□□□ -2.03
VPS50-206ENST00000443443 COL4A5P29400 1685 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 ADAMTS7Q9UKP4 1686 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 CLPSL1A2RUU4 121 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 COX7B2Q8TF08 81 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 TANC1Q9C0D5 1861 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 HEATR5BQ9P2D3 2071 aa2.38□□□□□ -2.03
VPS50-206ENST00000443443 ABCC2Q92887 1545 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 INO80Q9ULG1 1556 aaPredicted RBP2.37□□□□□ -2.03
VPS50-206ENST00000443443 TCHHQ07283 1943 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 SNRNP200O75643 2136 aaKnown RBP2.37□□□□□ -2.03
VPS50-206ENST00000443443 HMGN2P05204 90 aaKnown RBP2.37□□□□□ -2.03
VPS50-206ENST00000443443 SAA2P0DJI9 122 aaPredicted RBP2.37□□□□□ -2.03
VPS50-206ENST00000443443 RNASE3P12724 160 aaKnown RBP2.37□□□□□ -2.03
VPS50-206ENST00000443443 CCL3L1P16619 93 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 XAF1Q6GPH4 301 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 Q86TA4 180 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 TTTY12Q9BZ98 90 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 TMEM14BQ9NUH8 114 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 MROH1Q8NDA8 1641 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 SDK2Q58EX2 2172 aa2.37□□□□□ -2.03
VPS50-206ENST00000443443 LOC101927531A0A1B0GV80 90 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 UMAD1C9J7I0 102 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 F8WEM9 126 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 TXNDC17Q9BRA2 123 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 R4GMQ9 66 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 ARL2-SNX15V9GYD0 113 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 LRRC9Q6ZRR7 1453 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 ZNF142P52746 1687 aaPredicted RBP2.36□□□□□ -2.03
VPS50-206ENST00000443443 CDK13Q14004 1512 aaKnown RBP2.36□□□□□ -2.03
VPS50-206ENST00000443443 DIP2CQ9Y2E4 1556 aa2.36□□□□□ -2.03
VPS50-206ENST00000443443 LRRC37A3O60309 1634 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 PCNX2A6NKB5 2137 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 SEC16AO15027 2179 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 A0A087WWC5 75 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 RPL37AP61513 92 aaKnown RBP2.35□□□□□ -2.03
VPS50-206ENST00000443443 LINC00322Q6ZN03 302 aaPredicted RBP2.35□□□□□ -2.03
VPS50-206ENST00000443443 AMELXQ99217 191 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 LTN1O94822 1766 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 SCN11AQ9UI33 1791 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 SETBP1Q9Y6X0 1596 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 IQGAP3Q86VI3 1631 aa2.35□□□□□ -2.03
VPS50-206ENST00000443443 CACNA1DQ01668 2161 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 PTPRDP23468 1912 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 PPRC1Q5VV67 1664 aaKnown RBP2.34□□□□□ -2.03
VPS50-206ENST00000443443 EHBP1L1Q8N3D4 1523 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 TRBV6-5A0A0K0K1A5 114 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 MYMXA0A1B0GTQ4 84 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 COA5Q86WW8 74 aa2.34□□□□□ -2.03
VPS50-206ENST00000443443 KIF21AQ7Z4S6 1674 aa2.34□□□□□ -2.04
VPS50-206ENST00000443443 CUX1P39880 1505 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 PLXNA1Q9UIW2 1896 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 C7orf77A4D0Y5 90 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 IQCF6A8MYZ5 107 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 PLGLAQ15195 96 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 V9GYV3 84 aa2.33□□□□□ -2.04
VPS50-206ENST00000443443 MYO18AQ92614 2054 aaKnown RBP2.33□□□□□ -2.04
VPS50-206ENST00000443443 COL4A2P08572 1712 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms