RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 SMCO4Q9NRQ5 59 aa13.08□□□□□ -0.32
SHROOM1-204ENST00000440118 ENHOQ6UWT2 76 aa13.07□□□□□ -0.32
SHROOM1-204ENST00000440118 SMIM15Q7Z3B0 74 aa13.07□□□□□ -0.32
SHROOM1-204ENST00000440118 K7EN84 100 aa13.06□□□□□ -0.32
SHROOM1-204ENST00000440118 RBX1P62877 108 aa13.06□□□□□ -0.32
SHROOM1-204ENST00000440118 IQCJQ1A5X6 159 aa13.06□□□□□ -0.32
SHROOM1-204ENST00000440118 UBE2L6O14933 153 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 LINC01620Q4KN68 170 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 WDR73Q6P4I2 378 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 TMEM243Q9BU79 118 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 NIT2Q9NQR4 276 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 FAM30AQ9NZY2 134 aa13.05□□□□□ -0.32
SHROOM1-204ENST00000440118 GATCO43716 136 aaKnown RBP13.04□□□□□ -0.32
SHROOM1-204ENST00000440118 ADCYAP1P18509 176 aa13.04□□□□□ -0.32
SHROOM1-204ENST00000440118 LINC00269Q8N2A0 174 aa13.04□□□□□ -0.32
SHROOM1-204ENST00000440118 COTL1Q14019 142 aa13.03□□□□□ -0.32
SHROOM1-204ENST00000440118 BORCS7Q96B45 105 aa13.03□□□□□ -0.32
SHROOM1-204ENST00000440118 CNFNQ9BYD5 112 aa13.03□□□□□ -0.32
SHROOM1-204ENST00000440118 C9JQL5 133 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 AMTP48728 403 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 DEFB104AQ8WTQ1 72 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 SMIM7Q9BQ49 75 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 RPS10P5Q9NQ39 176 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 NAT8Q9UHE5 227 aa13.02□□□□□ -0.33
SHROOM1-204ENST00000440118 ZNF727A8MUV8 499 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 A8MWL6 223 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 USP17L23D6RBM5 183 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 TMEM241Q24JQ0 296 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 PGLYRP4Q96LB8 373 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 CTDSP1Q9GZU7 261 aa13.01□□□□□ -0.33
SHROOM1-204ENST00000440118 TRAV26-2A0A0B4J265 109 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 REG3AQ06141 175 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 GTSF1Q8WW33 167 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 PRR34Q9NV39 138 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 TMEM242Q9NWH2 141 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 FAT1Q14517 4588 aa13□□□□□ -0.33
SHROOM1-204ENST00000440118 IGLV10-54A0A075B6I4 117 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 C7orf77A4D0Y5 90 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 SCO1O75880 301 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 MT-ND4LP03901 98 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 Q6ZSA8 131 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 FAM231DQ6ZW35 169 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 BTF3L4Q96K17 158 aa12.99□□□□□ -0.33
SHROOM1-204ENST00000440118 SRRM2Q9UQ35 2752 aaKnown RBP12.98□□□□□ -0.33
SHROOM1-204ENST00000440118 DMBT1Q9UGM3 2413 aaPredicted RBP12.98□□□□□ -0.33
SHROOM1-204ENST00000440118 PLA2G1BP04054 148 aaKnown RBP12.97□□□□□ -0.33
SHROOM1-204ENST00000440118 CT83Q5H943 113 aa12.97□□□□□ -0.33
SHROOM1-204ENST00000440118 LINC00528Q8N1L1 170 aa12.97□□□□□ -0.33
SHROOM1-204ENST00000440118 GATD1Q8NB37 220 aa12.97□□□□□ -0.33
SHROOM1-204ENST00000440118 VPS13BQ7Z7G8 4022 aa12.96□□□□□ -0.33
SHROOM1-204ENST00000440118 PPP1R2P9O14990 202 aa12.96□□□□□ -0.33
SHROOM1-204ENST00000440118 SCXQ7RTU7 201 aa12.96□□□□□ -0.33
SHROOM1-204ENST00000440118 FLG2Q5D862 2391 aaPredicted RBP12.96□□□□□ -0.33
SHROOM1-204ENST00000440118 A0A1B0GUV1 79 aa12.95□□□□□ -0.34
SHROOM1-204ENST00000440118 AMMECR1LQ6DCA0 310 aa12.95□□□□□ -0.34
SHROOM1-204ENST00000440118 C20orf203Q8NBC4 194 aa12.95□□□□□ -0.34
SHROOM1-204ENST00000440118 ANAPC16Q96DE5 110 aa12.95□□□□□ -0.34
SHROOM1-204ENST00000440118 RPL39LQ96EH5 51 aaKnown RBP12.95□□□□□ -0.34
SHROOM1-204ENST00000440118 IGLV4-60A0A075B6I1 120 aa12.94□□□□□ -0.34
SHROOM1-204ENST00000440118 TRAV8-4A0A0B4J246 113 aa12.94□□□□□ -0.34
SHROOM1-204ENST00000440118 APCSP02743 223 aa12.94□□□□□ -0.34
SHROOM1-204ENST00000440118 FOXA3P55318 350 aaPredicted RBP12.94□□□□□ -0.34
SHROOM1-204ENST00000440118 LINC01551Q86U37 167 aa12.94□□□□□ -0.34
SHROOM1-204ENST00000440118 DNAH8Q96JB1 4490 aa12.93□□□□□ -0.34
SHROOM1-204ENST00000440118 S100PP25815 95 aa12.93□□□□□ -0.34
SHROOM1-204ENST00000440118 CHAC1Q9BUX1 264 aa12.93□□□□□ -0.34
SHROOM1-204ENST00000440118 IGKV3OR2-268A0A0C4DH90 116 aa12.92□□□□□ -0.34
SHROOM1-204ENST00000440118 HIGD1CA8MV81 97 aa12.92□□□□□ -0.34
SHROOM1-204ENST00000440118 PRSS1P07477 247 aa12.92□□□□□ -0.34
SHROOM1-204ENST00000440118 RNASEKQ6P5S7 137 aaKnown RBP12.92□□□□□ -0.34
SHROOM1-204ENST00000440118 TSKUQ8WUA8 353 aa12.92□□□□□ -0.34
SHROOM1-204ENST00000440118 A0A1B0GUT8 65 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 hDV102S1A0JD36 115 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 SDHAF1A6NFY7 115 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 NCR2O95944 276 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 GFRA4Q9GZZ7 299 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 HERC1Q15751 4861 aa12.91□□□□□ -0.34
SHROOM1-204ENST00000440118 PMCHP20382 165 aa12.9□□□□□ -0.34
SHROOM1-204ENST00000440118 DGAT2L7PQ6IED9 249 aa12.9□□□□□ -0.34
SHROOM1-204ENST00000440118 OSTCQ9NRP0 149 aa12.9□□□□□ -0.34
SHROOM1-204ENST00000440118 AP5S1Q9NUS5 200 aa12.9□□□□□ -0.34
SHROOM1-204ENST00000440118 ADIRFQ15847 76 aa12.89□□□□□ -0.35
SHROOM1-204ENST00000440118 KRTAP26-1Q6PEX3 210 aa12.89□□□□□ -0.35
SHROOM1-204ENST00000440118 TMA7Q9Y2S6 64 aaKnown RBP12.89□□□□□ -0.35
SHROOM1-204ENST00000440118 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 IGKV2-29A2NJV5 120 aaPredicted RBP12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 I3L3M4 83 aa12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 CBLN2Q8IUK8 224 aa12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 CIRBP-AS1Q8TBR5 109 aa12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 IMMP2LQ96T52 175 aa12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 ST20Q9HBF5 79 aa12.88□□□□□ -0.35
SHROOM1-204ENST00000440118 FAM231BA6NCW3 169 aa12.87□□□□□ -0.35
SHROOM1-204ENST00000440118 RIGQ13278 110 aa12.87□□□□□ -0.35
SHROOM1-204ENST00000440118 C1orf196B1AJZ1 125 aa12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 H7C423 109 aa12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 RAB5BP61020 215 aa12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 RPL23P62829 140 aaKnown RBP12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 TMEM101Q96IK0 257 aa12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 TMEM191AQ9H0A3 160 aa12.86□□□□□ -0.35
SHROOM1-204ENST00000440118 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms