RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 IGHV3-30-3P0DP02 117 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 SMAGPQ0VAQ4 97 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 ARL17AQ8IVW1 177 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 WFDC11Q8NEX6 87 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 ATP6V0E2Q8NHE4 81 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 FAM104AQ969W3 186 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 XCL2Q9UBD3 114 aa7.55□□□□□ -1.2
CD44-210ENST00000434472 ZNF462Q96JM2 2506 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 UBR5O95071 2799 aaPredicted RBP7.54□□□□□ -1.2
CD44-210ENST00000434472 DOPEY2Q9Y3R5 2298 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 COL12A1Q99715 3063 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 TRBV10-1A0A0K0K1A3 114 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 AZU1P20160 251 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 C21orf62-AS1Q17RA5 79 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 C1orf158Q8N1D5 194 aa7.54□□□□□ -1.2
CD44-210ENST00000434472 USP9YO00507 2555 aaPredicted RBP7.53□□□□□ -1.2
CD44-210ENST00000434472 A0A0J9YXY3 114 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 A0A1W2PRX2 142 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 PRM2P04554 102 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 RNASE1P07998 156 aaKnown RBP7.53□□□□□ -1.2
CD44-210ENST00000434472 PSMB2P49721 201 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 TIRAPP58753 221 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 GEMIN7Q9H840 131 aaKnown RBP7.53□□□□□ -1.2
CD44-210ENST00000434472 FAM208BQ5VWN6 2430 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 USP24Q9UPU5 2620 aa7.53□□□□□ -1.2
CD44-210ENST00000434472 IGHV3-64A0A075B6Q5 118 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.52□□□□□ -1.2
CD44-210ENST00000434472 IGKV2-29A2NJV5 120 aaPredicted RBP7.52□□□□□ -1.2
CD44-210ENST00000434472 A4D1N5 150 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 CIDEAO60543 219 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 RPL36AP83881 106 aaKnown RBP7.52□□□□□ -1.2
CD44-210ENST00000434472 DGAT2L7PQ6IED9 249 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 MUSTN1Q8IVN3 82 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 TMEM263Q8WUH6 116 aaKnown RBP7.52□□□□□ -1.2
CD44-210ENST00000434472 RPL36ALQ969Q0 106 aaKnown RBP7.52□□□□□ -1.2
CD44-210ENST00000434472 FAM110AQ9BQ89 295 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 SPANXDQ9BXN6 97 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 ESM1Q9NQ30 184 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 SPANXCQ9NY87 97 aa7.52□□□□□ -1.2
CD44-210ENST00000434472 TRGV1A0A0A0MS02 117 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 TRAV4A0A0B4J268 109 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 ETDBQ3ZM63 59 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 CEMP1Q6PRD7 247 aaPredicted RBP7.52□□□□□ -1.21
CD44-210ENST00000434472 Q6ZUT4 128 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 VSIG2Q96IQ7 327 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 CITED2Q99967 270 aaPredicted RBP7.52□□□□□ -1.21
CD44-210ENST00000434472 YAE1D1Q9NRH1 226 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 ERG28Q9UKR5 140 aa7.52□□□□□ -1.21
CD44-210ENST00000434472 NAV2Q8IVL1 2488 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 IGHV3OR16-12A0A075B7B8 117 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 K7EQD1 137 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 TIMM17BO60830 172 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 IGHV3-33P01772 117 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 SCGB1C2P0DMR2 95 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 DAZ2Q13117 558 aaKnown RBP7.51□□□□□ -1.21
CD44-210ENST00000434472 DAZ4Q86SG3 579 aaKnown RBP7.51□□□□□ -1.21
CD44-210ENST00000434472 DAZ3Q9NR90 486 aaKnown RBP7.51□□□□□ -1.21
CD44-210ENST00000434472 NDUFA12Q9UI09 145 aa7.51□□□□□ -1.21
CD44-210ENST00000434472 FBN2P35556 2912 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 CELSR1Q9NYQ6 3014 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 IGLV5-45A0A087WSX0 123 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 IGHV3-38A0A0C4DH36 116 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 ZFAND6Q6FIF0 208 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 SH2D6Q7Z4S9 175 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 FAM19A3Q7Z5A8 133 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 C11orf44Q8N8P7 122 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 LINC01006Q8NI28 216 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 C1QTNF4Q9BXJ3 329 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 CSDC2Q9Y534 153 aaKnown RBP7.5□□□□□ -1.21
CD44-210ENST00000434472 CREBBPQ92793 2442 aa7.5□□□□□ -1.21
CD44-210ENST00000434472 UTP20O75691 2785 aaKnown RBP7.49□□□□□ -1.21
CD44-210ENST00000434472 IFITM1P13164 125 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 HERVK_113P63121 156 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 SBSPONQ8IVN8 264 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 ZNF418Q8TF45 676 aaPredicted RBP7.49□□□□□ -1.21
CD44-210ENST00000434472 RNF183Q96D59 192 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 C16orf74Q96GX8 76 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 Q9UF83 564 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 LRRK2Q5S007 2527 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 TRAV8-3A0A0A6YYJ7 113 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 M0QXV9 152 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 TCL1BO95988 128 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 IGLV1-51P01701 117 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 SPINK8P0C7L1 97 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 KRTAP1-1Q07627 177 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 MIAQ16674 131 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 RNASE13Q5GAN3 156 aaKnown RBP7.49□□□□□ -1.21
CD44-210ENST00000434472 LITAFQ99732 161 aa7.49□□□□□ -1.21
CD44-210ENST00000434472 CELSR2Q9HCU4 2923 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 SVEP1Q4LDE5 3571 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 POLQO75417 2590 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 CHD6Q8TD26 2715 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 PTPN13Q12923 2485 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 NACAE9PAV3 2078 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 NDUFA7O95182 113 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 SMCPP49901 116 aaPredicted RBP7.48□□□□□ -1.21
CD44-210ENST00000434472 HIST2H2BDQ6DRA6 164 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 SIGMAR1Q99720 223 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 SPATA25Q9BR10 227 aa7.48□□□□□ -1.21
CD44-210ENST00000434472 SORL1Q92673 2214 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms