RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ESRGQ1W209 222 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 NEGR1Q7Z3B1 354 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 ZFP82Q8N141 532 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 OR2D3Q8NGH3 330 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SFRP2Q96HF1 295 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 PRADC1Q9BSG0 188 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 PHLDA3Q9Y5J5 127 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 HUWE1Q7Z6Z7 4374 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 TENM2Q9NT68 2774 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 TRBV20OR9-2A0A075B6H5 130 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 F2Z2F3 143 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 P01737 135 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 CRYGDP07320 174 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SRP19P09132 144 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 IGLC6P0CF74 106 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 KRTAP5-9P26371 169 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SRIP30626 198 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 RAB14P61106 215 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 CACNG7P62955 275 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 RHOHQ15669 191 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 FAM74A3Q4VXF1 159 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 LYPD5Q6UWN5 251 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 Q6ZR54 194 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 FAM231DQ6ZW35 169 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 ZNRF2Q8NHG8 242 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 UPK3BQ9BT76 320 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 MRPS16Q9Y3D3 137 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 LINC00588Q9Y4M8 146 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 ZNF727A8MUV8 499 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 A8MWL6 223 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 M0R381 172 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 GATCO43716 136 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 RPL19P84098 196 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 TMEM241Q24JQ0 296 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SPANXN1Q5VSR9 72 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 UFSP1Q6NVU6 142 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SLC25A29Q8N8R3 303 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 FER1L6-AS1Q8NA97 138 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 OR10AG1Q8NH19 301 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SMIM7Q9BQ49 75 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 RPP21Q9H633 154 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 MUC4Q99102 2169 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 HERC1Q15751 4861 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 IGHV3-73A0A0B4J1V6 119 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 TRBV10-1A0A0K0K1A3 114 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 NBDYA0A0U1RRE5 68 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 K7EP13 123 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 SIVA1O15304 175 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 CEBPGP53567 150 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 RAB4BP61018 213 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 LINC01620Q4KN68 170 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 TTC32Q5I0X7 151 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 SOHLH1Q5JUK2 328 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 LINC00336Q6ZUF6 198 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 ATP6V0E2Q8NHE4 81 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 SAMD10Q9BYL1 202 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 OSTCQ9NRP0 149 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 IGLV2-18A0A075B6J9 118 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 TRAV9-2A0A087WT02 112 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 A0A087WWC5 75 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 TRAV8-6A0A0B4J262 113 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 LOC100131303A0A0U1RQF7 123 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 FAM231BA6NCW3 169 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 K7EN84 100 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 M0R2N4 97 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 TRGC1P0CF51 173 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 SMIM17P0DL12 118 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 GZMBP10144 247 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 FOXA3P55318 350 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-208ENST00000423463 CLLU1Q5K131 121 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 C1orf134Q5TEV5 83 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 FAM74A4Q5TZK3 123 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 LYZL1Q6UWQ5 148 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 ERASQ7Z444 233 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 LINC01551Q86U37 167 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 C14orf178Q8N769 122 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-208ENST00000423463 C15orf54Q8N8G6 183 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 AP1S3Q96PC3 154 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 CNFNQ9BYD5 112 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 RNASE7Q9H1E1 156 aaKnown RBP1.67□□□□□ -2.14
VPS13A-208ENST00000423463 GTSF1LQ9H1H1 148 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 DHRS4-AS1Q9P1J3 65 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 NAT8Q9UHE5 227 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 KIF25-AS1Q9Y6Z4 181 aa1.67□□□□□ -2.14
VPS13A-208ENST00000423463 MUC21A0A0G2JKD1 596 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 MUC21A0A140T8X8 626 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 C9JQL5 133 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 H7C1H1 209 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 LINC00694P0DN24 101 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 NTF3P20783 257 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 EVI2AP22794 236 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 CTRLP40313 264 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 LINC00315P59091 139 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 RPL23P62829 140 aaKnown RBP1.66□□□□□ -2.14
VPS13A-208ENST00000423463 IFITM2Q01629 132 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 LELP1Q5T871 98 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 SMIM15Q7Z3B0 74 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.66□□□□□ -2.14
VPS13A-208ENST00000423463 TSKUQ8WUA8 353 aa1.66□□□□□ -2.14
VPS13A-208ENST00000423463 FRZBQ92765 325 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms