RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C9orf153Q5TBE3 101 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 DUX5Q96PT3 197 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 DNAJC30Q96LL9 226 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 COX7A2LO14548 114 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 UQCRQO14949 82 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 IGKV3-20P01619 116 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 NRGNQ92686 78 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 LMO4P61968 165 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 LINC00526Q96FQ7 95 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 UBE2D4Q9Y2X8 147 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 ZNF292O60281 2723 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 SPTBN1Q01082 2364 aaKnown RBP7.81□□□□□ -1.16
USP54-204ENST00000422491 CCL21O00585 134 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 NDUFA1O15239 70 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 PF4V1P10720 104 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 BEAN1Q3B7T3 259 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 CHCHD7Q9BUK0 85 aa7.81□□□□□ -1.16
USP54-204ENST00000422491 TLN1Q9Y490 2541 aaKnown RBP7.8□□□□□ -1.16
USP54-204ENST00000422491 K7EMT4 169 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 ATP5G1P05496 136 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 PROK1P58294 105 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 SPINK13Q1W4C9 94 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 IGHV3OR16-10A0A075B7F0 116 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 DAZ2Q13117 558 aaKnown RBP7.8□□□□□ -1.16
USP54-204ENST00000422491 DAZ4Q86SG3 579 aaKnown RBP7.8□□□□□ -1.16
USP54-204ENST00000422491 C5orf38Q86SI9 138 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 LINC00308Q8TCZ7 52 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 DAZ3Q9NR90 486 aaKnown RBP7.8□□□□□ -1.16
USP54-204ENST00000422491 C22orf24Q9Y442 160 aa7.8□□□□□ -1.16
USP54-204ENST00000422491 A0A1W2PPR1 153 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 IGHV3-73A0A0B4J1V6 119 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 HERVK_113P63121 156 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 Q8N2B8 174 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 Q9UF83 564 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 CDKN2A-AS1Q9UH64 79 aa7.79□□□□□ -1.16
USP54-204ENST00000422491 IGLV5-45A0A087WSX0 123 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 CXCL5P42830 114 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.78□□□□□ -1.16
USP54-204ENST00000422491 BPESC1Q9GZL8 116 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 PEMTQ9UBM1 199 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 CSDC2Q9Y534 153 aaKnown RBP7.78□□□□□ -1.16
USP54-204ENST00000422491 PTPRZ1P23471 2315 aaPredicted RBP7.78□□□□□ -1.16
USP54-204ENST00000422491 IGLV1-40P01703 118 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 ADORA2A-AS1P86434 159 aa7.78□□□□□ -1.16
USP54-204ENST00000422491 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.77□□□□□ -1.16
USP54-204ENST00000422491 LOC107984640A0A0U1RRK4 108 aa7.77□□□□□ -1.16
USP54-204ENST00000422491 IGKV2-29A2NJV5 120 aaPredicted RBP7.77□□□□□ -1.16
USP54-204ENST00000422491 TRACP01848 142 aa7.77□□□□□ -1.16
USP54-204ENST00000422491 UBTD1Q9HAC8 227 aa7.77□□□□□ -1.16
USP54-204ENST00000422491 CELSR1Q9NYQ6 3014 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 CIRBPQ14011 172 aaKnown RBP7.77□□□□□ -1.17
USP54-204ENST00000422491 SOSTDC1Q6X4U4 206 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 BRD3OSQ6XYD6 125 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 C2orf48Q96LS8 159 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 LINC00467Q9BRT7 94 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 KLK5Q9Y337 293 aaPredicted RBP7.77□□□□□ -1.17
USP54-204ENST00000422491 DOPEY2Q9Y3R5 2298 aa7.77□□□□□ -1.17
USP54-204ENST00000422491 COX7CP15954 63 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 TIRAPP58753 221 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 LY6EQ16553 131 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 RNF152Q8N8N0 203 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 K7EQG2 157 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 RBMY1A1P0DJD3 496 aaKnown RBP7.76□□□□□ -1.17
USP54-204ENST00000422491 RBMY1CP0DJD4 496 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 SNRPD3P62318 126 aaKnown RBP7.76□□□□□ -1.17
USP54-204ENST00000422491 HIST1H4AP62805 103 aaKnown RBP7.76□□□□□ -1.17
USP54-204ENST00000422491 BLCAPP62952 87 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 RBMY1FQ15415 496 aaKnown RBP7.76□□□□□ -1.17
USP54-204ENST00000422491 IGLV5-39A0A0G2JS06 123 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 A0A1B0GX51 115 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 BAALC-AS2P0C853 105 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 FAM222AQ5U5X8 452 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 Q6ZSN1 163 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 Q9H8V8 135 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 NACAE9PAV3 2078 aa7.76□□□□□ -1.17
USP54-204ENST00000422491 CFHR3Q02985 330 aa7.75□□□□□ -1.17
USP54-204ENST00000422491 LRRC75A-AS1Q8N1F1 130 aa7.75□□□□□ -1.17
USP54-204ENST00000422491 FAM218AQ96MZ4 157 aa7.75□□□□□ -1.17
USP54-204ENST00000422491 CRYGAP11844 174 aa7.75□□□□□ -1.17
USP54-204ENST00000422491 COX6A2Q02221 97 aa7.75□□□□□ -1.17
USP54-204ENST00000422491 COL6A6A6NMZ7 2263 aa7.74□□□□□ -1.17
USP54-204ENST00000422491 ABCA2Q9BZC7 2435 aa7.74□□□□□ -1.17
USP54-204ENST00000422491 A6NDX4 124 aa7.74□□□□□ -1.17
USP54-204ENST00000422491 KNCNA6PVL3 124 aa7.74□□□□□ -1.17
USP54-204ENST00000422491 J3KT08 172 aa7.74□□□□□ -1.17
USP54-204ENST00000422491 ZNF625Q96I27 306 aaPredicted RBP7.74□□□□□ -1.17
USP54-204ENST00000422491 A0A0U1RRA0 63 aa7.73□□□□□ -1.17
USP54-204ENST00000422491 PRORYQ9H606 182 aa7.73□□□□□ -1.17
USP54-204ENST00000422491 H3BUX3 64 aa7.73□□□□□ -1.17
USP54-204ENST00000422491 INAFM2P0DMQ5 153 aa7.73□□□□□ -1.17
USP54-204ENST00000422491 IGHV3OR16-12A0A075B7B8 117 aa7.72□□□□□ -1.17
USP54-204ENST00000422491 IGHV3-38A0A0C4DH36 116 aa7.72□□□□□ -1.17
USP54-204ENST00000422491 GAGE2AQ6NT46 116 aa7.72□□□□□ -1.17
USP54-204ENST00000422491 FAM19A5Q7Z5A7 132 aaPredicted RBP7.72□□□□□ -1.17
USP54-204ENST00000422491 COPS9Q8WXC6 57 aa7.72□□□□□ -1.17
USP54-204ENST00000422491 SPTAN1Q13813 2472 aaKnown RBP7.72□□□□□ -1.17
USP54-204ENST00000422491 ATOX1O00244 68 aa7.71□□□□□ -1.17
USP54-204ENST00000422491 HTN1P15515 57 aa7.71□□□□□ -1.17
USP54-204ENST00000422491 LINC00242Q5T6M2 205 aa7.71□□□□□ -1.17
USP54-204ENST00000422491 SMIM1B2RUZ4 78 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms