RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 REG3AQ06141 175 aa5.13□□□□□ -1.59
VIM-202ENST00000421459 SPANXN1Q5VSR9 72 aa5.13□□□□□ -1.59
VIM-202ENST00000421459 Q6ZRU5 148 aa5.13□□□□□ -1.59
VIM-202ENST00000421459 C20orf203Q8NBC4 194 aa5.13□□□□□ -1.59
VIM-202ENST00000421459 TCEAL7Q9BRU2 100 aa5.13□□□□□ -1.59
VIM-202ENST00000421459 SSBP4Q9BWG4 385 aaPredicted RBP5.13□□□□□ -1.59
VIM-202ENST00000421459 NKX6-2Q9C056 277 aaPredicted RBP5.13□□□□□ -1.59
VIM-202ENST00000421459 CARHSP1Q9Y2V2 147 aaKnown RBP5.13□□□□□ -1.59
VIM-202ENST00000421459 TRBV25-1A0A075B6N4 114 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 PDE6DO43924 150 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 MGPP08493 103 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 ADCYAP1P18509 176 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 CIRBPQ14011 172 aaKnown RBP5.12□□□□□ -1.59
VIM-202ENST00000421459 BAGE2Q86Y30 109 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 C11orf52Q96A22 123 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 MLST8Q9BVC4 326 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 SEC11CQ9BY50 192 aa5.12□□□□□ -1.59
VIM-202ENST00000421459 IGHV3-64A0A075B6Q5 118 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 IGHV1-24A0A0C4DH33 117 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 M0QY20 66 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 OR5AL1P0C617 328 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 CNBPP62633 177 aaKnown RBP5.11□□□□□ -1.59
VIM-202ENST00000421459 IQCJQ1A5X6 159 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 SUMO4Q6EEV6 95 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 CLRN3Q8NCR9 226 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 SPACA4Q8TDM5 124 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 TPPP3Q9BW30 176 aa5.11□□□□□ -1.59
VIM-202ENST00000421459 IGKV3OR2-268A0A0C4DH90 116 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 SMIM17P0DL12 118 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 PKIAP61925 76 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 COX6A2Q02221 97 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 HIGD2BQ4VC39 106 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 FAM74A3Q4VXF1 159 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 C15orf56Q8N910 161 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.1□□□□□ -1.59
VIM-202ENST00000421459 PRSS3P2Q8NHM4 247 aa5.1□□□□□ -1.59
VIM-202ENST00000421459 IGKV2-24A0A0C4DH68 120 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 GAGE12HA6NDE8 117 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 F8W036 122 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 CXCL1P09341 107 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 TMEM97Q5BJF2 176 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 GTSF1Q8WW33 167 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 AP1S3Q96PC3 154 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 AP5S1Q9NUS5 200 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 PLAC8Q9NZF1 115 aa5.09□□□□□ -1.59
VIM-202ENST00000421459 MAJINQ3KP22 176 aa5.08□□□□□ -1.6
VIM-202ENST00000421459 LINC01600Q96MT4 127 aa5.08□□□□□ -1.6
VIM-202ENST00000421459 TMEM243Q9BU79 118 aa5.08□□□□□ -1.6
VIM-202ENST00000421459 DPH3P1Q9H4G8 78 aa5.08□□□□□ -1.6
VIM-202ENST00000421459 TRBV20OR9-2A0A075B6H5 130 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.07□□□□□ -1.6
VIM-202ENST00000421459 TRAV8-4A0A0B4J246 113 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 A0A1B0GUV1 79 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 ZNF727A8MUV8 499 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 P01737 135 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 APOC3P02656 99 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 S100A9P06702 114 aaKnown RBP5.07□□□□□ -1.6
VIM-202ENST00000421459 IGLC6P0CF74 106 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 RPL35P42766 123 aaKnown RBP5.07□□□□□ -1.6
VIM-202ENST00000421459 PRR3P79522 188 aaKnown RBP5.07□□□□□ -1.6
VIM-202ENST00000421459 PNRC1Q12796 327 aaPredicted RBP5.07□□□□□ -1.6
VIM-202ENST00000421459 SVBPQ8N300 66 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 STPG4Q8N801 248 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 FER1L6-AS1Q8NA97 138 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 OR2D3Q8NGH3 330 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 C7orf33Q8WU49 177 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 LINC00526Q96FQ7 95 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 RNF185Q96GF1 192 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 SMIM7Q9BQ49 75 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 NAT8Q9UHE5 227 aa5.07□□□□□ -1.6
VIM-202ENST00000421459 A0A096LNI7 61 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 TRAV26-2A0A0B4J265 109 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 SNAPINO95295 136 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 RPS10P46783 165 aaKnown RBP5.06□□□□□ -1.6
VIM-202ENST00000421459 CEBPGP53567 150 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 TMEM241Q24JQ0 296 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 RASL11AQ6T310 242 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 LYZL1Q6UWQ5 148 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 SMIM12Q96EX1 92 aa5.06□□□□□ -1.6
VIM-202ENST00000421459 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.05□□□□□ -1.6
VIM-202ENST00000421459 IGKV2-29A2NJV5 120 aaPredicted RBP5.05□□□□□ -1.6
VIM-202ENST00000421459 C19orf71A6NCJ1 209 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 UBE2L6O14933 153 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 NTF3P20783 257 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 AMTP48728 403 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 KRTAP10-8P60410 259 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 RPL23P62829 140 aaKnown RBP5.05□□□□□ -1.6
VIM-202ENST00000421459 RHEBQ15382 184 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 CENPWQ5EE01 88 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 LINC01551Q86U37 167 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 CHCHD10Q8WYQ3 142 aaPredicted RBP5.05□□□□□ -1.6
VIM-202ENST00000421459 NIT2Q9NQR4 276 aa5.05□□□□□ -1.6
VIM-202ENST00000421459 H7C1H1 209 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 GNG4P50150 75 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 FOXA3P55318 350 aaPredicted RBP5.04□□□□□ -1.6
VIM-202ENST00000421459 CACNG7P62955 275 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 COTL1Q14019 142 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 WDR73Q6P4I2 378 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 GATD1Q8NB37 220 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 OCC1Q8TAD7 63 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms