RNA–Protein interactions for RNA: ENST00000415164.5

UBXN4-202, Transcript of UBX domain protein 4, humanhuman

TSL 4

Gene UBXN4, Length 548 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-202ENST00000415164 COTL1Q14019 142 aa12.23□□□□□ -0.45
UBXN4-202ENST00000415164 TRGC1P0CF51 173 aa12.22□□□□□ -0.45
UBXN4-202ENST00000415164 CFAP161Q6P656 301 aa12.22□□□□□ -0.45
UBXN4-202ENST00000415164 LYPD6BQ8NI32 183 aa12.22□□□□□ -0.45
UBXN4-202ENST00000415164 NIT2Q9NQR4 276 aa12.22□□□□□ -0.45
UBXN4-202ENST00000415164 KANTRA0A1W2PQU2 76 aa12.21□□□□□ -0.45
UBXN4-202ENST00000415164 LYZL1Q6UWQ5 148 aa12.21□□□□□ -0.45
UBXN4-202ENST00000415164 C15orf56Q8N910 161 aa12.21□□□□□ -0.45
UBXN4-202ENST00000415164 LRP2P98164 4655 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 XKRY2A2RUG3 117 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 RAB19A4D1S5 217 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 RPS10P46783 165 aaKnown RBP12.2□□□□□ -0.46
UBXN4-202ENST00000415164 GNG4P50150 75 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 AMMECR1LQ6DCA0 310 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 PGLYRP4Q96LB8 373 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 MANBALQ9NQG1 85 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 BATF3Q9NR55 127 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 PLAC8Q9NZF1 115 aa12.2□□□□□ -0.46
UBXN4-202ENST00000415164 BCL2L11O43521 198 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 IFNA1P01562 189 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 CCL20P78556 96 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 ZNF345Q14585 488 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 PRSS3P2Q8NHM4 247 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 RNF213Q63HN8 5207 aa12.19□□□□□ -0.46
UBXN4-202ENST00000415164 F2Z2F3 143 aa12.18□□□□□ -0.46
UBXN4-202ENST00000415164 NDUFS6O75380 124 aaKnown RBP12.18□□□□□ -0.46
UBXN4-202ENST00000415164 NTF3P20783 257 aa12.18□□□□□ -0.46
UBXN4-202ENST00000415164 ODF1Q14990 250 aa12.18□□□□□ -0.46
UBXN4-202ENST00000415164 RNASEKQ6P5S7 137 aaKnown RBP12.18□□□□□ -0.46
UBXN4-202ENST00000415164 STPG4Q8N801 248 aa12.18□□□□□ -0.46
UBXN4-202ENST00000415164 C11orf52Q96A22 123 aa12.18□□□□□ -0.46
UBXN4-202ENST00000415164 C19orf71A6NCJ1 209 aa12.17□□□□□ -0.46
UBXN4-202ENST00000415164 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.16□□□□□ -0.46
UBXN4-202ENST00000415164 TRAV26-2A0A0B4J265 109 aa12.16□□□□□ -0.46
UBXN4-202ENST00000415164 IGKV2-29A2NJV5 120 aaPredicted RBP12.16□□□□□ -0.46
UBXN4-202ENST00000415164 TWIST1Q15672 202 aa12.16□□□□□ -0.46
UBXN4-202ENST00000415164 RGS21Q2M5E4 152 aa12.16□□□□□ -0.46
UBXN4-202ENST00000415164 CHCHD10Q8WYQ3 142 aaPredicted RBP12.16□□□□□ -0.46
UBXN4-202ENST00000415164 EIF5AP63241 154 aaKnown RBP12.15□□□□□ -0.46
UBXN4-202ENST00000415164 PRR3P79522 188 aaKnown RBP12.15□□□□□ -0.46
UBXN4-202ENST00000415164 MED9Q9NWA0 146 aa12.14□□□□□ -0.47
UBXN4-202ENST00000415164 Q6ZNX1 250 aa12.13□□□□□ -0.47
UBXN4-202ENST00000415164 A0A096LNI7 61 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 HMSDA8MTL9 139 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 TEX46H3BTG2 121 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 APCSP02743 223 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 GATD1Q8NB37 220 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 RPL39LQ96EH5 51 aaKnown RBP12.12□□□□□ -0.47
UBXN4-202ENST00000415164 LINC01600Q96MT4 127 aa12.12□□□□□ -0.47
UBXN4-202ENST00000415164 XCL1P47992 114 aa12.11□□□□□ -0.47
UBXN4-202ENST00000415164 SMIM12Q96EX1 92 aa12.11□□□□□ -0.47
UBXN4-202ENST00000415164 BIN3Q9NQY0 253 aa12.11□□□□□ -0.47
UBXN4-202ENST00000415164 PDE6DO43924 150 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 FGF6P10767 208 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 CTRLP40313 264 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 MEF2BQ02080 365 aaPredicted RBP12.1□□□□□ -0.47
UBXN4-202ENST00000415164 C9orf62Q8N4C0 152 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 NUDT10Q8NFP7 164 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 LINC00526Q96FQ7 95 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 NUDT11Q96G61 164 aa12.1□□□□□ -0.47
UBXN4-202ENST00000415164 TRBV20OR9-2A0A075B6H5 130 aa12.09□□□□□ -0.47
UBXN4-202ENST00000415164 GVQW2A0A096LPI5 108 aaPredicted RBP12.09□□□□□ -0.47
UBXN4-202ENST00000415164 SMIM15Q7Z3B0 74 aa12.09□□□□□ -0.47
UBXN4-202ENST00000415164 BTF3L4Q96K17 158 aa12.08□□□□□ -0.48
UBXN4-202ENST00000415164 RPP21Q9H633 154 aaKnown RBP12.08□□□□□ -0.48
UBXN4-202ENST00000415164 TRAV1-1A0A0B4J248 108 aa12.07□□□□□ -0.48
UBXN4-202ENST00000415164 FOXI1Q12951 378 aa12.07□□□□□ -0.48
UBXN4-202ENST00000415164 REG3GQ6UW15 175 aa12.07□□□□□ -0.48
UBXN4-202ENST00000415164 TMEM101Q96IK0 257 aa12.07□□□□□ -0.48
UBXN4-202ENST00000415164 RNASE7Q9H1E1 156 aaKnown RBP12.07□□□□□ -0.48
UBXN4-202ENST00000415164 A0A0J9YXV3 536 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 SDHAF1A6NFY7 115 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 CCL25O15444 150 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 NCR2O95944 276 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 PMCHP20382 165 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 FOXA3P55318 350 aaPredicted RBP12.06□□□□□ -0.48
UBXN4-202ENST00000415164 CARD19Q96LW7 228 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 LINC00474Q9P2X8 69 aa12.06□□□□□ -0.48
UBXN4-202ENST00000415164 SPINK6Q6UWN8 80 aa12.05□□□□□ -0.48
UBXN4-202ENST00000415164 OR5A1Q8NGJ0 315 aa12.05□□□□□ -0.48
UBXN4-202ENST00000415164 PKIGQ9Y2B9 76 aa12.05□□□□□ -0.48
UBXN4-202ENST00000415164 H7C423 109 aa12.04□□□□□ -0.48
UBXN4-202ENST00000415164 BCL2P10415 239 aa12.04□□□□□ -0.48
UBXN4-202ENST00000415164 EIF5AL1Q6IS14 154 aaKnown RBP12.04□□□□□ -0.48
UBXN4-202ENST00000415164 IGHV1-58A0A0C4DH39 117 aa12.03□□□□□ -0.48
UBXN4-202ENST00000415164 LINC00959A0A1B0GUT2 108 aa12.02□□□□□ -0.49
UBXN4-202ENST00000415164 ZNF561-AS1K7EIQ3 104 aa12.02□□□□□ -0.49
UBXN4-202ENST00000415164 ZNF25P17030 456 aaPredicted RBP12.02□□□□□ -0.49
UBXN4-202ENST00000415164 Q6ZRP5 223 aa12.02□□□□□ -0.49
UBXN4-202ENST00000415164 CNFNQ9BYD5 112 aa12.02□□□□□ -0.49
UBXN4-202ENST00000415164 I3L3M4 83 aa12.01□□□□□ -0.49
UBXN4-202ENST00000415164 K7EN84 100 aa12.01□□□□□ -0.49
UBXN4-202ENST00000415164 GAGE2BQ13066 116 aa12.01□□□□□ -0.49
UBXN4-202ENST00000415164 SS18Q15532 418 aa12.01□□□□□ -0.49
UBXN4-202ENST00000415164 TMEM242Q9NWH2 141 aa12.01□□□□□ -0.49
UBXN4-202ENST00000415164 SYCNQ0VAF6 134 aa12□□□□□ -0.49
UBXN4-202ENST00000415164 TEX261Q6UWH6 196 aa12□□□□□ -0.49
UBXN4-202ENST00000415164 OCC1Q8TAD7 63 aa12□□□□□ -0.49
UBXN4-202ENST00000415164 GATCO43716 136 aaKnown RBP11.99□□□□□ -0.49
UBXN4-202ENST00000415164 KRTAP10-8P60410 259 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms