RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 C7orf33Q8WU49 177 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 C9orf85Q96MD7 179 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 PSMG3-AS1Q96PY0 264 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 NCKAP5O14513 1909 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 TRAV10A0A0B4J240 114 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 A0A1B0GW54 56 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 MT-ATP8P03928 68 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 ZNF80P51504 273 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-203ENST00000409050 POLR2KP53803 58 aaKnown RBP4.56□□□□□ -1.68
SCN1A-203ENST00000409050 SHISA2Q6UWI4 295 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 Q8N9L7 120 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 CEP250Q9BV73 2442 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 ZFP36P26651 326 aaKnown RBP4.56□□□□□ -1.68
SCN1A-203ENST00000409050 DEFB136Q30KP8 78 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 LINC00467Q9BRT7 94 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 Q8N6K4 173 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 NRACQ8N912 160 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 LOC107984640A0A0U1RRK4 108 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 HEATR5AQ86XA9 2040 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 IGKV2D-26A0A0A0MRZ7 120 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 CRIP2P52943 208 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-203ENST00000409050 GDF5OSQ5U4N7 250 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 UNQ9165/PRO28630Q6UXU0 137 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 MYLKQ15746 1914 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 TEX49A0A1B0GTD5 131 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 TTTY13Q9BZ97 58 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 CSDC2Q9Y534 153 aaKnown RBP4.55□□□□□ -1.68
SCN1A-203ENST00000409050 DOCK11Q5JSL3 2073 aa4.55□□□□□ -1.68
SCN1A-203ENST00000409050 HELZP42694 1942 aaKnown RBP4.55□□□□□ -1.68
SCN1A-203ENST00000409050 DEFB135Q30KP9 77 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 SPRNQ5BIV9 151 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 ENHOQ6UWT2 76 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 LINC00269Q8N2A0 174 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 UBE2D4Q9Y2X8 147 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 PHF3Q92576 2039 aaKnown RBP4.54□□□□□ -1.68
SCN1A-203ENST00000409050 DOPEY2Q9Y3R5 2298 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 CEP290O15078 2479 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 TRBV10-3A0A0K0K1G6 114 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 DNAJC9-AS1A6NH13 148 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 FAM19A1Q7Z5A9 133 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 ZNF295-AS1Q8N0V1 137 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 ANAPC1Q9H1A4 1944 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 CCKP06307 115 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 CRYGDP07320 174 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 RBX1P62877 108 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 E7EUB6 86 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 BRWD1-AS2P59051 145 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 KIAA2026Q5HYC2 2103 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 LINC00526Q96FQ7 95 aa4.54□□□□□ -1.68
SCN1A-203ENST00000409050 YLPM1P49750 1951 aaKnown RBP4.54□□□□□ -1.68
SCN1A-203ENST00000409050 TSHBP01222 138 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 RPL28P46779 137 aaKnown RBP4.53□□□□□ -1.68
SCN1A-203ENST00000409050 SDIM1Q6ZPB5 146 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 Q6ZTI0 123 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 UBE2D1P51668 147 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 EGFEM1PQ0D2K5 195 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 MAPK1IP1LQ8NDC0 245 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 FER1L5A0AVI2 2057 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 IGLV2-11P01706 119 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 C6orf99Q4VX62 202 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 MRPS12O15235 138 aaKnown RBP4.53□□□□□ -1.68
SCN1A-203ENST00000409050 C2orf91Q6ZV80 131 aa4.53□□□□□ -1.68
SCN1A-203ENST00000409050 NACAE9PAV3 2078 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 RTTNQ86VV8 2226 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 HIGD2AQ9BW72 106 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 ZDBF2Q9HCK1 2354 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 C11orf71Q6IPW1 123 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 DEFB131BA0A096LNP1 70 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 TP53TG3Q9ULZ0 132 aa4.52□□□□□ -1.69
SCN1A-203ENST00000409050 GRNP28799 593 aaKnown RBP4.51□□□□□ -1.69
SCN1A-203ENST00000409050 Q8N976 141 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 CREBBPQ92793 2442 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 ZNF73O43830 326 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-203ENST00000409050 IGLV1-40P01703 118 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 CACNA1GO43497 2377 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 LINC00959A0A1B0GUT2 108 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 IGHV4-31P0DP07 118 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 UBE2D3P61077 147 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 CRIP1P50238 77 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 MAPKAPK5-AS1Q8N8E1 139 aa4.51□□□□□ -1.69
SCN1A-203ENST00000409050 MALRD1Q5VYJ5 2156 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 ZNF106Q9H2Y7 1883 aaKnown RBP4.5□□□□□ -1.69
SCN1A-203ENST00000409050 RNASE3P12724 160 aaKnown RBP4.5□□□□□ -1.69
SCN1A-203ENST00000409050 C1orf195Q5TG92 126 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 CRIP3Q6Q6R5 217 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 ABCA1O95477 2261 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 NTM-AS1Q6ZSK4 140 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 DOCK9Q9BZ29 2069 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 IGIPA6NJ69 53 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 Q6ZQY7 126 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 A6NED7 52 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 MSMPQ1L6U9 139 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 FRMD6-AS1P0C7T7 363 aa4.5□□□□□ -1.69
SCN1A-203ENST00000409050 Q8NA96 180 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 C2orf48Q96LS8 159 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 CDC42SE2Q9NRR3 84 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 PLXNB3Q9ULL4 1909 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 SMIM11BQ8TCY0 68 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 ARFGEF3Q5TH69 2177 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 DOCK8Q8NF50 2099 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms