RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TRBV7-3A0A075B6L6 115 aa13.54□□□□□ -0.24
USP39-202ENST00000409025 RPL36AP83881 106 aaKnown RBP13.54□□□□□ -0.24
USP39-202ENST00000409025 COTL1Q14019 142 aa13.54□□□□□ -0.24
USP39-202ENST00000409025 PHLDA1Q8WV24 401 aaPredicted RBP13.54□□□□□ -0.24
USP39-202ENST00000409025 RPL36ALQ969Q0 106 aaKnown RBP13.54□□□□□ -0.24
USP39-202ENST00000409025 HINT1P49773 126 aaPredicted RBP13.53□□□□□ -0.24
USP39-202ENST00000409025 EMP1P54849 157 aa13.53□□□□□ -0.24
USP39-202ENST00000409025 PAPPA-AS1Q5QFB9 102 aa13.53□□□□□ -0.24
USP39-202ENST00000409025 PCP2Q8IVA1 136 aa13.53□□□□□ -0.24
USP39-202ENST00000409025 C3orf56Q8N813 242 aa13.53□□□□□ -0.24
USP39-202ENST00000409025 TENM1Q9UKZ4 2725 aa13.53□□□□□ -0.24
USP39-202ENST00000409025 IGKV2D-26A0A0A0MRZ7 120 aa13.52□□□□□ -0.24
USP39-202ENST00000409025 IGHV3-38A0A0C4DH36 116 aa13.52□□□□□ -0.24
USP39-202ENST00000409025 SLC25A29Q8N8R3 303 aa13.52□□□□□ -0.24
USP39-202ENST00000409025 ATRQ13535 2644 aa13.52□□□□□ -0.24
USP39-202ENST00000409025 C2orf91Q6ZV80 131 aa13.52□□□□□ -0.25
USP39-202ENST00000409025 CHCHD7Q9BUK0 85 aa13.52□□□□□ -0.25
USP39-202ENST00000409025 PYGO1Q9Y3Y4 419 aa13.52□□□□□ -0.25
USP39-202ENST00000409025 X6R8D5 127 aa13.52□□□□□ -0.25
USP39-202ENST00000409025 NOTCH3Q9UM47 2321 aa13.51□□□□□ -0.25
USP39-202ENST00000409025 A0A1B0GV90 55 aa13.51□□□□□ -0.25
USP39-202ENST00000409025 SIVA1O15304 175 aa13.51□□□□□ -0.25
USP39-202ENST00000409025 OPRPNQ99935 248 aaPredicted RBP13.51□□□□□ -0.25
USP39-202ENST00000409025 IGLV4-69A0A075B6H9 119 aa13.5□□□□□ -0.25
USP39-202ENST00000409025 IGLV4-3A0A075B6K6 122 aa13.5□□□□□ -0.25
USP39-202ENST00000409025 COL5A1-AS1Q5SY13 56 aa13.5□□□□□ -0.25
USP39-202ENST00000409025 SHISA2Q6UWI4 295 aa13.5□□□□□ -0.25
USP39-202ENST00000409025 TRGV4A0A0C4DH28 118 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 TMEM97Q5BJF2 176 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 C12orf54Q6X4T0 127 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 VCX2Q9H322 139 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 ZMAT5Q9UDW3 170 aaKnown RBP13.49□□□□□ -0.25
USP39-202ENST00000409025 TRBV6-4A0A1B0GX49 114 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 NPSP0C0P6 89 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 MPV17L2Q567V2 206 aa13.49□□□□□ -0.25
USP39-202ENST00000409025 DAZ4Q86SG3 579 aaKnown RBP13.49□□□□□ -0.25
USP39-202ENST00000409025 DAZ3Q9NR90 486 aaKnown RBP13.49□□□□□ -0.25
USP39-202ENST00000409025 VWFP04275 2813 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 GAGE12JA6NER3 117 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 C11orf86A6NJI1 115 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 GAGE1Q13065 139 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 GAGE4Q13068 117 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 GAGE5Q13069 117 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 DEFB135Q30KP9 77 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 GAGE13Q4V321 117 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 SPANXA1Q9NS26 97 aa13.48□□□□□ -0.25
USP39-202ENST00000409025 UBE2D3P61077 147 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 UBE2D2P62837 147 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.47□□□□□ -0.25
USP39-202ENST00000409025 IGKV2-29A2NJV5 120 aaPredicted RBP13.47□□□□□ -0.25
USP39-202ENST00000409025 DEFB130BP0DP73 79 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 DEFB130AP0DP74 79 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 CRYBA4P53673 196 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 PRIMA1Q86XR5 153 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 LINC00612Q8N6U2 182 aa13.47□□□□□ -0.25
USP39-202ENST00000409025 FHL2Q14192 279 aa13.46□□□□□ -0.25
USP39-202ENST00000409025 TTTY13Q9BZ97 58 aa13.46□□□□□ -0.25
USP39-202ENST00000409025 UBE2D4Q9Y2X8 147 aa13.46□□□□□ -0.25
USP39-202ENST00000409025 TRAV8-6A0A0B4J262 113 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 IGHV4-30-4P0DP06 118 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 OR11H2Q8NH07 326 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 E9PLD3 99 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 HERVK_113P61574 105 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 OXLD1Q5BKU9 147 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 BVES-AS1Q5T3Y7 98 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 CEMP1Q6PRD7 247 aaPredicted RBP13.45□□□□□ -0.26
USP39-202ENST00000409025 NFE4Q86UQ8 179 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 AMELXQ99217 191 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 PRADC1Q9BSG0 188 aa13.45□□□□□ -0.26
USP39-202ENST00000409025 TMEM170BQ5T4T1 132 aa13.43□□□□□ -0.26
USP39-202ENST00000409025 FAM104AQ969W3 186 aa13.43□□□□□ -0.26
USP39-202ENST00000409025 LYRM9A8MSI8 78 aa13.43□□□□□ -0.26
USP39-202ENST00000409025 CHAC1Q9BUX1 264 aa13.43□□□□□ -0.26
USP39-202ENST00000409025 HIGD1BQ9P298 99 aa13.43□□□□□ -0.26
USP39-202ENST00000409025 LOC100131303A0A0U1RQF7 123 aa13.42□□□□□ -0.26
USP39-202ENST00000409025 MAPKAPK5-AS1Q8N8E1 139 aa13.42□□□□□ -0.26
USP39-202ENST00000409025 TIMM21Q9BVV7 248 aa13.42□□□□□ -0.26
USP39-202ENST00000409025 HSD52Q0P140 79 aa13.41□□□□□ -0.26
USP39-202ENST00000409025 TRBV25-1A0A075B6N4 114 aa13.41□□□□□ -0.26
USP39-202ENST00000409025 FAM222AQ5U5X8 452 aa13.41□□□□□ -0.26
USP39-202ENST00000409025 NTM-AS1Q6ZSK4 140 aa13.41□□□□□ -0.26
USP39-202ENST00000409025 GTSF1LQ9H1H1 148 aa13.41□□□□□ -0.26
USP39-202ENST00000409025 IGHV4-28A0A0C4DH34 117 aa13.4□□□□□ -0.26
USP39-202ENST00000409025 A0A0J9YXV3 536 aa13.4□□□□□ -0.26
USP39-202ENST00000409025 MIFP14174 115 aa13.4□□□□□ -0.26
USP39-202ENST00000409025 DGAT2L7PQ6IED9 249 aa13.4□□□□□ -0.26
USP39-202ENST00000409025 MRPS36P82909 103 aaKnown RBP13.39□□□□□ -0.27
USP39-202ENST00000409025 Q6ZUT4 128 aa13.39□□□□□ -0.27
USP39-202ENST00000409025 RNF183Q96D59 192 aa13.39□□□□□ -0.27
USP39-202ENST00000409025 MYMXA0A1B0GTQ4 84 aa13.39□□□□□ -0.27
USP39-202ENST00000409025 KRTAP10-11P60412 298 aa13.39□□□□□ -0.27
USP39-202ENST00000409025 SMAGPQ0VAQ4 97 aa13.39□□□□□ -0.27
USP39-202ENST00000409025 RNASE13Q5GAN3 156 aaKnown RBP13.39□□□□□ -0.27
USP39-202ENST00000409025 EGFEM1PQ0D2K5 195 aa13.38□□□□□ -0.27
USP39-202ENST00000409025 SBSPONQ8IVN8 264 aa13.37□□□□□ -0.27
USP39-202ENST00000409025 DEFB4AO15263 64 aa13.37□□□□□ -0.27
USP39-202ENST00000409025 ZNF22P17026 224 aaPredicted RBP13.37□□□□□ -0.27
USP39-202ENST00000409025 TMEM243Q9BU79 118 aa13.37□□□□□ -0.27
USP39-202ENST00000409025 LINC00694P0DN24 101 aa13.36□□□□□ -0.27
USP39-202ENST00000409025 ZNF25P17030 456 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms