RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MRPS36P82909 103 aaKnown RBP9.29□□□□□ -0.92
SHMT1-205ENST00000395684 LITAFQ99732 161 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 PRB1P04280 392 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 TIMM21Q9BVV7 248 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 EDA2RQ9HAV5 297 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 USP9YO00507 2555 aaPredicted RBP9.28□□□□□ -0.92
SHMT1-205ENST00000395684 GATA3P23771 443 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 ADAMTSL4-AS1Q5T5F5 129 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 Q6ZSN1 163 aa9.28□□□□□ -0.92
SHMT1-205ENST00000395684 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.27□□□□□ -0.93
SHMT1-205ENST00000395684 A8MZ25 164 aa9.27□□□□□ -0.93
SHMT1-205ENST00000395684 DEFB131AP59861 70 aa9.27□□□□□ -0.93
SHMT1-205ENST00000395684 Q1RN00 199 aa9.27□□□□□ -0.93
SHMT1-205ENST00000395684 MAPK1IP1LQ8NDC0 245 aa9.27□□□□□ -0.93
SHMT1-205ENST00000395684 TNFRSF18Q9Y5U5 241 aa9.27□□□□□ -0.93
SHMT1-205ENST00000395684 DOPEY1Q5JWR5 2465 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 RBMY1BA6NDE4 496 aaKnown RBP9.26□□□□□ -0.93
SHMT1-205ENST00000395684 RBMY1EA6NEQ0 496 aaKnown RBP9.26□□□□□ -0.93
SHMT1-205ENST00000395684 RBMY1DP0C7P1 496 aaKnown RBP9.26□□□□□ -0.93
SHMT1-205ENST00000395684 IGHV1-58A0A0C4DH39 117 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 PRSS2P07478 247 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 C18orf65Q6ZTR6 163 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 UBE2E2Q96LR5 201 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 CHCHD7Q9BUK0 85 aa9.26□□□□□ -0.93
SHMT1-205ENST00000395684 BEX4Q9NWD9 120 aaPredicted RBP9.26□□□□□ -0.93
SHMT1-205ENST00000395684 MXRA5Q9NR99 2828 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 M0QXV9 152 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 DEFB136Q30KP8 78 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 LINC01356Q8N9X3 169 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 GEMIN7Q9H840 131 aaKnown RBP9.25□□□□□ -0.93
SHMT1-205ENST00000395684 H3BMM0 161 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 TRIAP1O43715 76 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 SLURP1P55000 103 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 ZNF702PQ9H963 129 aa9.25□□□□□ -0.93
SHMT1-205ENST00000395684 PRRC2AP48634 2157 aaKnown RBP9.25□□□□□ -0.93
SHMT1-205ENST00000395684 TENM4Q6N022 2769 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 DUX3Q96PT4 197 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 NDUFA12Q9UI09 145 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 UBE2D4Q9Y2X8 147 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.24□□□□□ -0.93
SHMT1-205ENST00000395684 IGKV2-29A2NJV5 120 aaPredicted RBP9.24□□□□□ -0.93
SHMT1-205ENST00000395684 ATXN8Q156A1 80 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 LINC01620Q4KN68 170 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 VSIG2Q96IQ7 327 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 VPREB3Q9UKI3 123 aa9.24□□□□□ -0.93
SHMT1-205ENST00000395684 HELZ2Q9BYK8 2649 aaKnown RBP9.23□□□□□ -0.93
SHMT1-205ENST00000395684 TRBV30A0A0K0K1B3 111 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 Q6ZSV7 163 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 NACAE9PAV3 2078 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 A0A096LNT2 108 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 TINCRA0A1B0GVN0 87 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 A8MTW9 85 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 Q5PR19 223 aa9.23□□□□□ -0.93
SHMT1-205ENST00000395684 NTN5Q8WTR8 489 aaPredicted RBP9.23□□□□□ -0.93
SHMT1-205ENST00000395684 BBC3Q96PG8 261 aaPredicted RBP9.23□□□□□ -0.93
SHMT1-205ENST00000395684 IGHV3-38A0A0C4DH36 116 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 TMEM262E9PQX1 116 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 NPC2P61916 151 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 LINC00467Q9BRT7 94 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 KMT2BQ9UMN6 2715 aaPredicted RBP9.22□□□□□ -0.93
SHMT1-205ENST00000395684 POLQO75417 2590 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 SPANXDQ9BXN6 97 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 SPANXCQ9NY87 97 aa9.22□□□□□ -0.93
SHMT1-205ENST00000395684 TRAV26-1A0A087WT03 109 aa9.21□□□□□ -0.93
SHMT1-205ENST00000395684 DSCR9P59020 149 aa9.21□□□□□ -0.93
SHMT1-205ENST00000395684 SPANXA1Q9NS26 97 aa9.21□□□□□ -0.93
SHMT1-205ENST00000395684 TEX49A0A1B0GTD5 131 aa9.21□□□□□ -0.94
SHMT1-205ENST00000395684 MIAQ16674 131 aa9.21□□□□□ -0.94
SHMT1-205ENST00000395684 TMEM61Q8N0U2 210 aa9.21□□□□□ -0.94
SHMT1-205ENST00000395684 FBN2P35556 2912 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 Q6YL49 198 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 C11orf72Q8NBR9 251 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 ICOSQ9Y6W8 199 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 FASNP49327 2511 aaKnown RBP9.2□□□□□ -0.94
SHMT1-205ENST00000395684 TRBV10-2A0A0K0K1G8 114 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 ZNF415Q09FC8 603 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 PIK3CD-AS1Q5SR53 167 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.2□□□□□ -0.94
SHMT1-205ENST00000395684 LINC01600Q96MT4 127 aa9.2□□□□□ -0.94
SHMT1-205ENST00000395684 CDKN2A-AS1Q9UH64 79 aa9.19□□□□□ -0.94
SHMT1-205ENST00000395684 J3QLI3 93 aa9.19□□□□□ -0.94
SHMT1-205ENST00000395684 IGHV3-53P01767 116 aa9.19□□□□□ -0.94
SHMT1-205ENST00000395684 ZFAND6Q6FIF0 208 aa9.19□□□□□ -0.94
SHMT1-205ENST00000395684 LINC01587Q99440 93 aa9.19□□□□□ -0.94
SHMT1-205ENST00000395684 DAND5Q8N907 189 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 CITED1Q99966 193 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 HIST2H2BDQ6DRA6 164 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 GCN1Q92616 2671 aaKnown RBP9.18□□□□□ -0.94
SHMT1-205ENST00000395684 CUBNO60494 3623 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 H7C423 109 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
SHMT1-205ENST00000395684 RNF183Q96D59 192 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 MAP6D1Q9H9H5 199 aa9.18□□□□□ -0.94
SHMT1-205ENST00000395684 ANKRD17O75179 2603 aaKnown RBP9.17□□□□□ -0.94
SHMT1-205ENST00000395684 FSHBP01225 129 aa9.17□□□□□ -0.94
SHMT1-205ENST00000395684 CLEC2BQ92478 149 aa9.17□□□□□ -0.94
SHMT1-205ENST00000395684 CRLF1O75462 422 aa9.17□□□□□ -0.94
SHMT1-205ENST00000395684 COX6A2Q02221 97 aa9.17□□□□□ -0.94
SHMT1-205ENST00000395684 BEAN1Q3B7T3 259 aa9.17□□□□□ -0.94
SHMT1-205ENST00000395684 TMEM101Q96IK0 257 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms