RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 C9orf163Q8N9P6 203 aa10.67□□□□□ -0.7
PTPRK-208ENST00000392449 DPH3P1Q9H4G8 78 aa10.67□□□□□ -0.7
PTPRK-208ENST00000392449 TRGC1P0CF51 173 aa10.66□□□□□ -0.7
PTPRK-208ENST00000392449 CTRLP40313 264 aa10.66□□□□□ -0.7
PTPRK-208ENST00000392449 HNRNPA3P51991 378 aaKnown RBP10.66□□□□□ -0.7
PTPRK-208ENST00000392449 TCTE3Q8IZS6 198 aa10.66□□□□□ -0.7
PTPRK-208ENST00000392449 C9orf62Q8N4C0 152 aa10.66□□□□□ -0.7
PTPRK-208ENST00000392449 NIT2Q9NQR4 276 aa10.66□□□□□ -0.7
PTPRK-208ENST00000392449 TWIST1Q15672 202 aa10.65□□□□□ -0.7
PTPRK-208ENST00000392449 DGAT2L7PQ6IED9 249 aa10.65□□□□□ -0.7
PTPRK-208ENST00000392449 FOXA3P55318 350 aaPredicted RBP10.64□□□□□ -0.71
PTPRK-208ENST00000392449 RPL37AP61513 92 aaKnown RBP10.64□□□□□ -0.71
PTPRK-208ENST00000392449 SLC51BQ86UW2 128 aa10.64□□□□□ -0.71
PTPRK-208ENST00000392449 hDV102S1A0JD36 115 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 AMTP48728 403 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 SDIM1Q6ZPB5 146 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 GATD1Q8NB37 220 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 OCC1Q8TAD7 63 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 PGLYRP4Q96LB8 373 aa10.63□□□□□ -0.71
PTPRK-208ENST00000392449 RPP21Q9H633 154 aaKnown RBP10.63□□□□□ -0.71
PTPRK-208ENST00000392449 A0A1B0GUV1 79 aa10.62□□□□□ -0.71
PTPRK-208ENST00000392449 SLPIP03973 132 aa10.62□□□□□ -0.71
PTPRK-208ENST00000392449 GTSF1Q8WW33 167 aa10.62□□□□□ -0.71
PTPRK-208ENST00000392449 RPL39LQ96EH5 51 aaKnown RBP10.62□□□□□ -0.71
PTPRK-208ENST00000392449 BIN3Q9NQY0 253 aa10.62□□□□□ -0.71
PTPRK-208ENST00000392449 IGKV3OR2-268A0A0C4DH90 116 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 UBE2L6O14933 153 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 COTL1Q14019 142 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 CNFNQ9BYD5 112 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 Q6ZNX1 250 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 CLRN3Q8NCR9 226 aa10.61□□□□□ -0.71
PTPRK-208ENST00000392449 TRAV8-4A0A0B4J246 113 aa10.6□□□□□ -0.71
PTPRK-208ENST00000392449 CHTF8P0CG12 524 aa10.6□□□□□ -0.71
PTPRK-208ENST00000392449 CNBPP62633 177 aaKnown RBP10.6□□□□□ -0.71
PTPRK-208ENST00000392449 WDR73Q6P4I2 378 aa10.6□□□□□ -0.71
PTPRK-208ENST00000392449 HMCN2Q8NDA2 5059 aa10.59□□□□□ -0.71
PTPRK-208ENST00000392449 ALKAL2Q6UX46 152 aa10.59□□□□□ -0.71
PTPRK-208ENST00000392449 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.58□□□□□ -0.72
PTPRK-208ENST00000392449 IGKV2-29A2NJV5 120 aaPredicted RBP10.58□□□□□ -0.72
PTPRK-208ENST00000392449 GAGE12HA6NDE8 117 aa10.58□□□□□ -0.72
PTPRK-208ENST00000392449 C15orf56Q8N910 161 aa10.58□□□□□ -0.72
PTPRK-208ENST00000392449 OXTP01178 125 aa10.57□□□□□ -0.72
PTPRK-208ENST00000392449 TAGLN2P37802 199 aaKnown RBP10.57□□□□□ -0.72
PTPRK-208ENST00000392449 CEBPGP53567 150 aa10.57□□□□□ -0.72
PTPRK-208ENST00000392449 hCG_2014768A0A024R1R8 64 aa10.56□□□□□ -0.72
PTPRK-208ENST00000392449 GAS8-AS1O95177 125 aa10.56□□□□□ -0.72
PTPRK-208ENST00000392449 IGHV3-64A0A075B6Q5 118 aa10.55□□□□□ -0.72
PTPRK-208ENST00000392449 GATCO43716 136 aaKnown RBP10.55□□□□□ -0.72
PTPRK-208ENST00000392449 CIRBPQ14011 172 aaKnown RBP10.55□□□□□ -0.72
PTPRK-208ENST00000392449 HIGD2BQ4VC39 106 aa10.55□□□□□ -0.72
PTPRK-208ENST00000392449 AP5S1Q9NUS5 200 aa10.55□□□□□ -0.72
PTPRK-208ENST00000392449 AMMECR1LQ6DCA0 310 aa10.55□□□□□ -0.72
PTPRK-208ENST00000392449 RNASEKQ6P5S7 137 aaKnown RBP10.55□□□□□ -0.72
PTPRK-208ENST00000392449 A0A087WYN8 130 aa10.54□□□□□ -0.72
PTPRK-208ENST00000392449 SDHAF1A6NFY7 115 aa10.54□□□□□ -0.72
PTPRK-208ENST00000392449 AKAP14Q86UN6 197 aa10.54□□□□□ -0.72
PTPRK-208ENST00000392449 CHCHD10Q8WYQ3 142 aaPredicted RBP10.54□□□□□ -0.72
PTPRK-208ENST00000392449 DPH3Q96FX2 82 aa10.54□□□□□ -0.72
PTPRK-208ENST00000392449 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.53□□□□□ -0.72
PTPRK-208ENST00000392449 TMEM250H0YL14 139 aa10.53□□□□□ -0.72
PTPRK-208ENST00000392449 APCSP02743 223 aa10.53□□□□□ -0.72
PTPRK-208ENST00000392449 FGF6P10767 208 aa10.53□□□□□ -0.72
PTPRK-208ENST00000392449 SMIM15Q7Z3B0 74 aa10.53□□□□□ -0.72
PTPRK-208ENST00000392449 SPACA4Q8TDM5 124 aa10.53□□□□□ -0.72
PTPRK-208ENST00000392449 FAM231BA6NCW3 169 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 BLOC1S1P78537 153 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 COX6A2Q02221 97 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 SERTAD4-AS1Q5TG53 156 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 FAM231DQ6ZW35 169 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 LYPD6BQ8NI32 183 aa10.51□□□□□ -0.73
PTPRK-208ENST00000392449 A8MWL6 223 aa10.5□□□□□ -0.73
PTPRK-208ENST00000392449 NCR2O95944 276 aa10.5□□□□□ -0.73
PTPRK-208ENST00000392449 TSHBP01222 138 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 PMCHP20382 165 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 RPS10P46783 165 aaKnown RBP10.49□□□□□ -0.73
PTPRK-208ENST00000392449 PRSS3P2Q8NHM4 247 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 TMEM242Q9NWH2 141 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 IGKV2-24A0A0C4DH68 120 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 I3L3M4 83 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 FOXI1Q12951 378 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 LINC00526Q96FQ7 95 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 SMIM7Q9BQ49 75 aa10.49□□□□□ -0.73
PTPRK-208ENST00000392449 TRBV6-5A0A0K0K1A5 114 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 HIGD1CA8MV81 97 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 MT1HL1P0DM35 61 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 XCL1P47992 114 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 CT83Q5H943 113 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 CFAP161Q6P656 301 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 TEX261Q6UWH6 196 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 LINC01551Q86U37 167 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 RNF185Q96GF1 192 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 EIF5A2Q9GZV4 153 aaKnown RBP10.48□□□□□ -0.73
PTPRK-208ENST00000392449 UBR4Q5T4S7 5183 aa10.48□□□□□ -0.73
PTPRK-208ENST00000392449 H7C423 109 aa10.47□□□□□ -0.73
PTPRK-208ENST00000392449 PHOX2AO14813 284 aa10.47□□□□□ -0.73
PTPRK-208ENST00000392449 PLAC8Q9NZF1 115 aa10.47□□□□□ -0.73
PTPRK-208ENST00000392449 GVQW2A0A096LPI5 108 aaPredicted RBP10.46□□□□□ -0.74
PTPRK-208ENST00000392449 SMKR1H3BMG3 65 aa10.46□□□□□ -0.74
PTPRK-208ENST00000392449 CCL25O15444 150 aa10.46□□□□□ -0.74
PTPRK-208ENST00000392449 ESDP10768 282 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms